View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_11 (Length: 522)
Name: NF3804_low_11
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_11 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0939 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 35975760 - 35975254
Alignment:
| Q |
18 |
aaatctgcatcaaaataaaacttggagtagaagaaaaaggactaaatgtgtggctgagagtctaacgaagtggaagaaatacaatgcacaattatatgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35975760 |
aaatctgcatcaaaataaaacttggagtagaagaaaaaggactaaatgtgtggc-gagagtctaacgaagtggaagaaatacaatgcgcaattatatgct |
35975662 |
T |
|
| Q |
118 |
ggtaaagatgatggtataccgaagctaaagcaccttcaaaaggttcaaagaaagggtttatgaaagggaaaggaggacctcaaaactcagaataaatat- |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35975661 |
ggtaaagatgatggtataccgaagctaaagcaccttcaaaaggttcaaagaaaggatgtatgaaagggaaaggaggacctcaaaactcagaataaatata |
35975562 |
T |
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| Q |
217 |
--ggtgtcagacaaaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagactttggttaggtactttccctacagctcaaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35975561 |
gaggtgtcagacaaaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagacttaagttaggtactttccctacagctcaaga |
35975462 |
T |
|
| Q |
315 |
agccgctcttgcttatgattatgctgctagaactatgtatggtacttctgcgcgacttaacttgcccgatatctcagattatagctctattaaggaatat |
414 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35975461 |
agccgctcttgcttatgattctgctgctagagctatgtatggtacttctgcacgacttaacttgcccgatatctcagattatagctctgttaaggaatat |
35975362 |
T |
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| Q |
415 |
ttgatggattcttcatcggctgctgctagtcgttcttcttcactggcaacaatgcctgcaacatctgagacaacaactgtgtctagtcattctgaggtct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
35975361 |
ttgatggattcttcatcggctgctgctagtcgttcttcttcactggcaacaatgcctgcaacatctgagaaaacaactgcgtctagtcattctgaggttt |
35975262 |
T |
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| Q |
515 |
gtgctgct |
522 |
Q |
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||| |||| |
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| T |
35975261 |
gtgttgct |
35975254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 34 - 519
Target Start/End: Complemental strand, 35978773 - 35978282
Alignment:
| Q |
34 |
aaaacttggagtagaagaaaaaggactaaatgtgtggctgagagtctaacgaagtggaagaaatacaatgcacaattatatgctggtaaagatgatggta |
133 |
Q |
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|||||| |||||||| ||||| | ||||||| ||||||||||| |||| | || |||||| ||||||||| | | |||||||||||||||||||||| |
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| T |
35978773 |
aaaactaggagtagaggaaaaggaactaaatctgtggctgagactctagcaaaatggaaggaatacaatgagaagctttatgctggtaaagatgatggta |
35978674 |
T |
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| Q |
134 |
taccgaagc-taaagcaccttcaaaaggttcaaagaaagggtttatgaaagggaaaggaggacctcaaaactc--agaataaatat---ggtgtcagaca |
227 |
Q |
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||| |||| ||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||| ||||| ||||| |
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| T |
35978673 |
aaccaaagcgtaaagcaccggctaaaggttcaaagaaagggtgtatgaaaggtaaaggaggacctcaaaactcggagaataagtatcgaggtgttagaca |
35978574 |
T |
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| Q |
228 |
aaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagactttggttaggtactttccctacagctcaagaagccgctcttgct |
327 |
Q |
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|||||||||||||||||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||| || || ||||||||||| ||||||||| |
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| T |
35978573 |
gaggacttgggggaaatgggttgctgagattagggaaccaaatagaggaagtagactttggttaggtacttttccgacggctcaagaagctgctcttgct |
35978474 |
T |
|
| Q |
328 |
tatgattatgctgctagaactatgtatggtacttctgcgcgacttaacttgcccgatatctcagattatagctctattaaggaatatttgatggattctt |
427 |
Q |
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|||||||||||||||||| | ||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
35978473 |
tatgattatgctgctagagccatgtatggtccttctgcgcgacttaactttcctgatatctcagattatagatctattcaggaatatttgaaggattctt |
35978374 |
T |
|
| Q |
428 |
catcggctgctgctagtcgttcttcttcactggcaacaatgcctgcaacatctgagacaacaactgtgtctagtcattctgaggtctgtgct |
519 |
Q |
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|| | || |||||||| ||| |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35978373 |
cagcagcagctgctagctgttgttcttcggtggcaacaacgcctgcgacatctgagacaacaactgtgtctagtcattctgaggtttgtgct |
35978282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 511
Target Start/End: Original strand, 35970860 - 35971345
Alignment:
| Q |
16 |
caaaatctgcatcaaaataaaacttggagtagaagaaaaaggactaaatgtgtggctgagagtctaacgaagtggaagaaatacaatgcacaattatatg |
115 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| |||| | ||||||||| ||||||||| || ||||| |
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| T |
35970860 |
caaaatgtgcatcaaaataaaacttggactagaaaaaaagggactaaatctgtggctgagattctagcaaagtggaaggaatacaatgagaaactatat- |
35970958 |
T |
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| Q |
116 |
ctggtaaagatgatggtataccgaagct-aaagcaccttcaaaaggttcaaagaaagggtttatgaaagggaaaggaggacctcaaaactcaga--ataa |
212 |
Q |
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|||||||| |||| ||||||| ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
35970959 |
-----aaagatgacggtaagccgaagcggaaatcaggg-caaaaggttcaaagaaagggtgtatgaaagggaaaggaggacctcaaaacccagagaataa |
35971052 |
T |
|
| Q |
213 |
atat---ggtgtcagacaaaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagactttggttaggtactttccctacagct |
309 |
Q |
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|||| ||||| ||||||||| |||||| ||||| | ||| |||||| |||| || || |||| ||||||||||||||||| | ||| ||| |
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| T |
35971053 |
atatagaggtgttagacaaagg-----ggggaattgggttggtgatattaggaaaccaaaaggt---agtaaactttggttaggtacttctcttactgct |
35971144 |
T |
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| Q |
310 |
caagaagccgctcttgcttatgattatgctgctagaactatgtatggtacttctgcgcgacttaacttgcccgatatctcagattatagctctattaagg |
409 |
Q |
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|||||| | ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||| ||||||| | |||||||||| || ||||||| |
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| T |
35971145 |
caagaaactgctcttgcttatgattatgctgccagagtcatgtatggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaagg |
35971243 |
T |
|
| Q |
410 |
aatatttgatggattcttcatcggctgctgctagtcgttcttcttcactggcaacaatgcctgcaacatctgagacaacaactgtgtctagtcattctga |
509 |
Q |
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||||||||| ||||||||||| |||| || |||| | | |||||| | | ||||| |||| || ||||||||||||| ||||||||||||||| ||| |
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| T |
35971244 |
aatatttgaaggattcttcattggcttctactagctgctgttcttcggtagtaacaactcctgtaaaatctgagacaacagctgtgtctagtcattatga |
35971343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0939 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0939
Description:
Target: scaffold0939; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 2507 - 2586
Alignment:
| Q |
217 |
ggtgtcagacaaaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagactttggttaggtac |
296 |
Q |
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||||| || |||||||||||||| |||||||| ||||||||| | || || ||||| |||| ||| || ||||||||||| |
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| T |
2507 |
ggtgttaggcaaaggacttggggaaaatgggttgctgaaattcgcgagccaaatagagggaataggctctggttaggtac |
2586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 37650984 - 37651066
Alignment:
| Q |
217 |
ggtgtcagacaaaggacttgggggaaatgggtggctgaaattagggaacctaatagtgggagtagactttggttaggtacttt |
299 |
Q |
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||||| |||||||||||||||||||||||||| ||||||| | || || ||| | |||||||| || ||| |||||||||| |
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| T |
37650984 |
ggtgtgagacaaaggacttgggggaaatgggtttctgaaatccgtgagccgaatcgagggagtaggctatggctaggtacttt |
37651066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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