View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_12 (Length: 516)
Name: NF3804_low_12
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 5474603 - 5474116
Alignment:
| Q |
18 |
ttttttatatgctttcccgtatcattatcaccgtgagaaattttccattacggtacttattctacttcaatttcatcctcgttcctccatttcattttcc |
117 |
Q |
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| T |
5474603 |
ttttttatatgctttcccgtatccttatcaccgtgagaaattttccattacggtacttattctacttcaatttcatcctcgttcctccatttcattttcc |
5474504 |
T |
|
| Q |
118 |
tcaacaagcatagttctcttaattggatatttagatgcaatatgtccttggtcttgacacttaaaacacttaaacatttttgtcggtatcatttggatga |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5474503 |
tcaacaagcatagttctcttaattagatatttagatgcaatatgtccttggtcttgacacttaaaacacttaaacatttttgtcggtatcatttggatga |
5474404 |
T |
|
| Q |
218 |
atgatagttttaccttttgtttcaattgtcgtcttgaaagatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggt |
317 |
Q |
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| T |
5474403 |
atgatagttttaccttttgtttcaattgtcgtcttgaaagatgaagaaccctcctttcttttgtttgtttgtccttccaattttgagagttgagagcggt |
5474304 |
T |
|
| Q |
318 |
agttctcttctttgcatgactcttcctttttagttgttgttctgccttgattgccttgatggattgatgcaccaattcttctatctccatgtaatgatgc |
417 |
Q |
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| T |
5474303 |
agttctcttctttgcatgactcttccttttgagttgttgttctgccttgattgccttgatggattcatgcaccaattcttctatctccatgtaatgatgc |
5474204 |
T |
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| Q |
418 |
aactccaacacatcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccacgttgacccttt |
505 |
Q |
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| T |
5474203 |
aactccaccacatcacttatgtcatagtttagaccaggaagaaatttggccatggttgcttcattttcttcctccacgttgacccttt |
5474116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 13960945 - 13961022
Alignment:
| Q |
108 |
ttcattttcctcaacaagcatagttctcttaattggatatttagatgcaatatgtccttggtcttgacacttaaaaca |
185 |
Q |
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| T |
13960945 |
ttcattttcctccacaagcatagttctctttgttggacattcagatgcaatatgccctttgccttgacacttgaaaca |
13961022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 15383781 - 15383704
Alignment:
| Q |
108 |
ttcattttcctcaacaagcatagttctcttaattggatatttagatgcaatatgtccttggtcttgacacttaaaaca |
185 |
Q |
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| T |
15383781 |
ttcattttcctccacaagcatagttctctttgttggacattcagatgcactatgccctttgccttgacacttgaaaca |
15383704 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 14577417 - 14577481
Alignment:
| Q |
430 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
494 |
Q |
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| T |
14577417 |
tcactaatgtcatgatttagaccatgaagaaatctggccatggttgcttcattgtcttcctccac |
14577481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 12365999 - 12366066
Alignment:
| Q |
118 |
tcaacaagcatagttctcttaattggatatttagatgcaatatgtccttggtcttgacacttaaaaca |
185 |
Q |
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| T |
12365999 |
tcaataagcatagttctctttgtaggacattgagatgcaatatgcccttgaccttgacacttaaaaca |
12366066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 20742489 - 20742425
Alignment:
| Q |
430 |
tcacttatgtcatagtttagaccaggaacaaatttggccatggttgcttcattttcttcctccac |
494 |
Q |
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| T |
20742489 |
tcactaatgtcatgatttagaccatgaagaaatctagccatggttgcttcattgtcttcctccac |
20742425 |
T |
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