View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_14 (Length: 483)
Name: NF3804_low_14
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 33998235 - 33998685
Alignment:
| Q |
16 |
tcatcaaagcttcatttaaaggaatcaattttcaatctgtc-aagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagta |
114 |
Q |
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| T |
33998235 |
tcatcaaagcttcatttaaaggaatcaattttgaatctgtccaagatgaagttaggaagcacaatagcactattgtaagtgaatctgtccagaaaaagta |
33998334 |
T |
|
| Q |
115 |
aaaccaattggtgccaatgaaataaggcatctcaacaagaataatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccact |
214 |
Q |
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| T |
33998335 |
aaaccaattggtgccaatgaaataaggcatctcaacaagaatgatctctatatctatgattgaatcttgagttaattaggtgaacgatatgcactccact |
33998434 |
T |
|
| Q |
215 |
ctaacttgctacaagaattcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33998435 |
ctaacttgctacaagaattcaccacaatctcttatattgacaaatcatgacttttcaaatcaaattatacacatattcttcacaaggaatgatgttttaa |
33998534 |
T |
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| Q |
315 |
ttagttaactgaaaacaatgcaacgataagatctgaagaaaataaatgaggaatttacaaatctggataaagaggtaaactgtttggaaagtgnnnnnnn |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33998535 |
ttagttaactgaaaacaatgcaacgataagatctgaagaaaataaatgaggaatttacaaatctggataaagaggtaaacagtttggaaagtgaaaaaaa |
33998634 |
T |
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| Q |
415 |
tagtatcgtgaaaacaagagagaaatcactaataattttcactcacttgtt |
465 |
Q |
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| T |
33998635 |
tagtatcgtgaaaacaagagagaaatcactaataattttcactcacttgtt |
33998685 |
T |
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