View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_21 (Length: 449)
Name: NF3804_low_21
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 32 - 432
Target Start/End: Complemental strand, 40441278 - 40440878
Alignment:
| Q |
32 |
caatttgatgaagataccggtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
131 |
Q |
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| T |
40441278 |
caatttgatgaagataccagtgaaaaccactacacatgtagggagcatttaattgactacaccctacccctccggtaacctacataggagtaataacctc |
40441179 |
T |
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| Q |
132 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
231 |
Q |
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| T |
40441178 |
taacttaaaacatagtttcttagttgtctccaagtccaagaagttgtgggtgctaccactatcaaggaagacttgtaatgatttcttgtcatgcattccc |
40441079 |
T |
|
| Q |
232 |
aaaactcacacaggttagtaatttgcaatgcagttatggcttgaagggagagatggggattgtgaaattgagggttaagtatagacgcactatctcgatg |
331 |
Q |
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| T |
40441078 |
aaaactcacacaggttagtaatttgcaatgcagttatggcttgaagggagagatggggattgtgaaattgagggttaagtatagacgcactatctcgatg |
40440979 |
T |
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| Q |
332 |
ttccacgacaatttattcatcattaacctcaccgtcatcatccttatctaattccaacactaataatcgagactttttgcgtttgagttggtgactaggt |
431 |
Q |
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| T |
40440978 |
ttccatgacaatttattcatcattaacctcaccgtcatcatccttatctaattccaacactaataatcgagactttttgcgtttgagttggtgactaggt |
40440879 |
T |
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| Q |
432 |
g |
432 |
Q |
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| T |
40440878 |
g |
40440878 |
T |
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