View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_28 (Length: 372)
Name: NF3804_low_28
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_28 |
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| [»] scaffold0386 (3 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 296
Target Start/End: Original strand, 2238 - 2375
Alignment:
| Q |
159 |
tataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgt |
258 |
Q |
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| T |
2238 |
tataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgt |
2337 |
T |
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| Q |
259 |
taacagaattaatagaggaccatttttctgcaattact |
296 |
Q |
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| T |
2338 |
taccaaaattaatacaggaccatttttgtgcaattact |
2375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 2105 - 2170
Alignment:
| Q |
5 |
atgaaactgaatttactcaattgaacttgtagtgaacttggtaaactcaggaaaattcgcaataat |
70 |
Q |
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| T |
2105 |
atgaaactgaatttactcaattgaacttgtagtgaacttggtaaactcaggtaaattcacaataat |
2170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 2410 - 2470
Alignment:
| Q |
294 |
actagatttggatcacagttaagctatcgtgaggaatgcaaattctattgcatgggggtatt |
355 |
Q |
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| T |
2410 |
actagattacgatcacagataagctgtcgtgag-aatgcaaattttattgcatgggggtatt |
2470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 6075774 - 6075888
Alignment:
| Q |
160 |
ataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgtt |
259 |
Q |
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| T |
6075774 |
ataagagcattattctcaagttcaattgtaa---------tctttacttgttaaggaga--atcctataatatattgtgagcataaagcattggtttgtt |
6075862 |
T |
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| Q |
260 |
aacagaattaatagaggaccattttt |
285 |
Q |
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| T |
6075863 |
accagaattaacagaggaccattttt |
6075888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 6075950 - 6076003
Alignment:
| Q |
298 |
gatttggatcacagttaagctatcgtgaggaatgcaaattctattgcatggggg |
351 |
Q |
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| T |
6075950 |
gatttggatcacagttaggctatcgtgaggaatgcaaattctattgcatggggg |
6076003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 5688996 - 5688920
Alignment:
| Q |
225 |
tataatatattgtgagcataaagcattggtttgttaac---agaattaatagaggaccatttttctg-caattacta |
297 |
Q |
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| T |
5688996 |
tataatatattgtgagcataaagcattggtttgttaccagaagaattaatagaggaccatttttgtgccaattacta |
5688920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 5696333 - 5696293
Alignment:
| Q |
160 |
ataagagcattattctctagttcaattgtaagatatataat |
200 |
Q |
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| T |
5696333 |
ataagagcattattctcaagttcaattgtaagatatataat |
5696293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 5697091 - 5697046
Alignment:
| Q |
16 |
tttactcaattgaacttgtagtgaacttggtaaactcaggaaaatt |
61 |
Q |
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| T |
5697091 |
tttactcaattgaacttgtagtgaatttggtaaacacaggtaaatt |
5697046 |
T |
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