View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_low_29 (Length: 371)

Name: NF3804_low_29
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_low_29
NF3804_low_29
[»] chr1 (5 HSPs)
chr1 (13-347)||(28083066-28083416)
chr1 (69-117)||(25479581-25479629)
chr1 (52-109)||(51256853-51256910)
chr1 (47-75)||(16980748-16980776)
chr1 (47-79)||(41638426-41638458)
[»] chr3 (5 HSPs)
chr3 (56-117)||(37138277-37138338)
chr3 (45-79)||(33307696-33307730)
chr3 (47-77)||(39971241-39971271)
chr3 (81-114)||(32064451-32064484)
chr3 (49-81)||(41452453-41452485)
[»] chr8 (6 HSPs)
chr8 (81-117)||(1470031-1470067)
chr8 (49-80)||(9731117-9731148)
chr8 (69-116)||(10075574-10075621)
chr8 (49-80)||(35220816-35220847)
chr8 (47-79)||(1433467-1433499)
chr8 (47-79)||(26813921-26813953)
[»] chr2 (3 HSPs)
chr2 (48-79)||(35809856-35809887)
chr2 (125-153)||(9478015-9478043)
chr2 (69-117)||(43985025-43985073)
[»] chr7 (4 HSPs)
chr7 (76-117)||(26935579-26935620)
chr7 (47-79)||(6552386-6552418)
chr7 (69-117)||(20881658-20881706)
chr7 (69-117)||(46104589-46104637)
[»] chr6 (1 HSPs)
chr6 (72-117)||(29837106-29837151)
[»] chr4 (2 HSPs)
chr4 (49-86)||(51555976-51556013)
chr4 (48-81)||(54414872-54414905)
[»] chr5 (3 HSPs)
chr5 (81-117)||(3237105-3237141)
chr5 (81-117)||(17258905-17258941)
chr5 (47-79)||(27104530-27104562)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 28083416 - 28083066
Alignment:
Q  13 taggcccggtctggtaaactagcatatgcatgagacttatcatataagtgcttatgtataagttattatcataatctatcctaaagagcttatgaaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28083416 taggcccggtctggtaaactagcatatgcatgagacttatcatataagtgcgtatgtataagttattatcataatctatcctaaagagcttatgaaaata 28083317  T
Q  113 agctgnnnnnnntatggatatgtgataagttgttttcataaactaactcatttggattgacacaatg------------------aaatgctccccctca 194  Q
    |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||| |||    
T  28083316 agctgaaaaaa-tatggatatgtgataagttgttttcataaactaactcatttggattgacacaatggtttttgttgggaccttgaaatgctcccc-tca 28083219  T
Q  195 aggttcgattatccccccaatctatgtgggctaagttcataactttgtttttaaatgggtcccgcaagtggacggtgggattcaacacctattaatatgt 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  28083218 aggttcgattatccccccaatctatgtgggctaagttcataactttgtttttaaatgggtcccgcaggtggacggtgggattggacacctattaatatgt 28083119  T
Q  295 ccttagtccggatgagnnnnnnnaaaaaattatttaaataagtgaatgtagac 347  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||    
T  28083118 ccttagtccggatgagttttttaaaaaaattatttaaataagtgaatgtagac 28083066  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 25479581 - 25479629
Alignment:
Q  69 tataagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||| || |||||| |||||||| |||||||||||||||||||||    
T  25479581 tataagttgttttcataagctatcctagagagcttatgaaaataagctg 25479629  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 51256910 - 51256853
Alignment:
Q  52 tcatataagtgcttatgtataagttattatcataatctatcctaaagagcttatgaaa 109  Q
    |||| |||||||||||||||||||| || |||||| ||||||||  ||| ||||||||    
T  51256910 tcatttaagtgcttatgtataagttgttttcataagctatcctagcgagattatgaaa 51256853  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 16980748 - 16980776
Alignment:
Q  47 acttatcatataagtgcttatgtataagt 75  Q
    |||||||||||||||||||||||||||||    
T  16980748 acttatcatataagtgcttatgtataagt 16980776  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 41638458 - 41638426
Alignment:
Q  47 acttatcatataagtgcttatgtataagttatt 79  Q
    ||||||||||||||||||||||||||| |||||    
T  41638458 acttatcatataagtgcttatgtataatttatt 41638426  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 37138277 - 37138338
Alignment:
Q  56 ataagtgcttatgtataagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||||||||||||||||||| |||||| ||||| || |||| ||| ||||||||||||    
T  37138277 ataagtgcttatgtataagttattttcataagctatcttagagagtttaggaaaataagctg 37138338  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 33307730 - 33307696
Alignment:
Q  45 agacttatcatataagtgcttatgtataagttatt 79  Q
    |||||||||||||||||||||||||||||| ||||    
T  33307730 agacttatcatataagtgcttatgtataagctatt 33307696  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 39971241 - 39971271
Alignment:
Q  47 acttatcatataagtgcttatgtataagtta 77  Q
    |||||||||||||||||||||||||||||||    
T  39971241 acttatcatataagtgcttatgtataagtta 39971271  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 32064451 - 32064484
Alignment:
Q  81 tcataatctatcctaaagagcttatgaaaataag 114  Q
    |||||| |||||||||||||||||||||||||||    
T  32064451 tcataaactatcctaaagagcttatgaaaataag 32064484  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 41452453 - 41452485
Alignment:
Q  49 ttatcatataagtgcttatgtataagttattat 81  Q
    ||||||||||||||||||||||||| |||||||    
T  41452453 ttatcatataagtgcttatgtataacttattat 41452485  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 1470031 - 1470067
Alignment:
Q  81 tcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||||||||| ||||||||||||||||||||||    
T  1470031 tcataatctatcctgaagagcttatgaaaataagctg 1470067  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 9731148 - 9731117
Alignment:
Q  49 ttatcatataagtgcttatgtataagttatta 80  Q
    ||||||||||||||||||||||||||||||||    
T  9731148 ttatcatataagtgcttatgtataagttatta 9731117  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 10075621 - 10075574
Alignment:
Q  69 tataagttattatcataatctatcctaaagagcttatgaaaataagct 116  Q
    |||||| |||| |||||| |||||||| ||||||||||||||||||||    
T  10075621 tataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 80
Target Start/End: Complemental strand, 35220847 - 35220816
Alignment:
Q  49 ttatcatataagtgcttatgtataagttatta 80  Q
    ||||||||||||||||||||||||||||||||    
T  35220847 ttatcatataagtgcttatgtataagttatta 35220816  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 1433467 - 1433499
Alignment:
Q  47 acttatcatataagtgcttatgtataagttatt 79  Q
    |||||||||||||||| ||||||||||||||||    
T  1433467 acttatcatataagtggttatgtataagttatt 1433499  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 26813953 - 26813921
Alignment:
Q  47 acttatcatataagtgcttatgtataagttatt 79  Q
    ||||||||||||||||||||||||||| |||||    
T  26813953 acttatcatataagtgcttatgtataaattatt 26813921  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 79
Target Start/End: Original strand, 35809856 - 35809887
Alignment:
Q  48 cttatcatataagtgcttatgtataagttatt 79  Q
    ||||||||||||||||||||||||||||||||    
T  35809856 cttatcatataagtgcttatgtataagttatt 35809887  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 9478015 - 9478043
Alignment:
Q  125 tatggatatgtgataagttgttttcataa 153  Q
    |||||||||||||||||||||||||||||    
T  9478015 tatggatatgtgataagttgttttcataa 9478043  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 43985073 - 43985025
Alignment:
Q  69 tataagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||| || |||||| ||||| | ||||||||||||||||||||||    
T  43985073 tataagttgttttcataagctatcttgaagagcttatgaaaataagctg 43985025  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 26935620 - 26935579
Alignment:
Q  76 tattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  26935620 tattttcataatctattctaaagagcttatggaaataagctg 26935579  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 6552418 - 6552386
Alignment:
Q  47 acttatcatataagtgcttatgtataagttatt 79  Q
    |||||||||||||||||||||||| ||||||||    
T  6552418 acttatcatataagtgcttatgtacaagttatt 6552386  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 20881706 - 20881658
Alignment:
Q  69 tataagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||| || |||||| ||||| |||||| |||||||||||||||||    
T  20881706 tataagttgttttcataaactatcttaaagaacttatgaaaataagctg 20881658  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 46104637 - 46104589
Alignment:
Q  69 tataagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||| || |||||| |||| || ||||||||||||||||||||||    
T  46104637 tataagttgttttcataagctatgctgaagagcttatgaaaataagctg 46104589  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 29837151 - 29837106
Alignment:
Q  72 aagttattatcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||||| |||||| ||||||| |||||||||||||||| |||||    
T  29837151 aagttattttcataaactatcctgaagagcttatgaaaattagctg 29837106  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 51556013 - 51555976
Alignment:
Q  49 ttatcatataagtgcttatgtataagttattatcataa 86  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  51556013 ttatcatataagtgcttatgtataagctattattataa 51555976  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 54414872 - 54414905
Alignment:
Q  48 cttatcatataagtgcttatgtataagttattat 81  Q
    ||||||||||||||||||||||||||| ||||||    
T  54414872 cttatcatataagtgcttatgtataagctattat 54414905  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 3237105 - 3237141
Alignment:
Q  81 tcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  3237105 tcataagctatcctaaagagcttatgaaaatatgctg 3237141  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 17258941 - 17258905
Alignment:
Q  81 tcataatctatcctaaagagcttatgaaaataagctg 117  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  17258941 tcataaactatcctgaagagcttatgaaaataagctg 17258905  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 27104562 - 27104530
Alignment:
Q  47 acttatcatataagtgcttatgtataagttatt 79  Q
    |||||||||||||||||||| ||||||||||||    
T  27104562 acttatcatataagtgcttacgtataagttatt 27104530  T

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