View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_32 (Length: 347)
Name: NF3804_low_32
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 5416126 - 5416438
Alignment:
| Q |
10 |
agaagaagaattttagtgctaactttgtacttaattgggtctcagaacagtgtaccttagctatagtttaaactccaagaaaatatacactattcactaa |
109 |
Q |
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| T |
5416126 |
agaagaagaattttagtgctaactttgtacttaattgggtctcagaacagtgtaccttagctatattttaaactccaagaaaatatacactattcactaa |
5416225 |
T |
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| Q |
110 |
taatgtatcatatttcaacttttttaaaaaagttgtttaaaataaatgtaagtaaagtgagagaataagatctttcatattttgagatctttgaatattt |
209 |
Q |
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| T |
5416226 |
taatgtatcatatttcaactttttaaaaaaagttgtt-------aatgtaagtaaagtgagataataagatctttcatattttgagatctttgaatattt |
5416318 |
T |
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| Q |
210 |
gtattaattgttaatacacggttggtttctgcttagtttatgattttgtttcatgctatacaaagaatataagaagaagaccccacagaaggttatgatt |
309 |
Q |
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| T |
5416319 |
gtattaattgttaatgcacggttggtttctgcttagtttatgattttgtttcatgctatacaaagaatataagaagaagaccccactgaaggttatgatt |
5416418 |
T |
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| Q |
310 |
gttattgcaagggcatgatt |
329 |
Q |
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| T |
5416419 |
gttattgcaagggcatgatt |
5416438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 5435351 - 5435415
Alignment:
| Q |
204 |
atatttgtattaattgttaatacacggttggtttctgcttagtttatgattttgtttcatgctata |
269 |
Q |
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| T |
5435351 |
atatttatattaaccgctaatgcacggttggtttctgcttagtttatga-tttgtttcatcctata |
5435415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 5433867 - 5433921
Alignment:
| Q |
14 |
gaagaattttagtgctaactttgtacttaattgggtctcagaacagtgtacctta |
68 |
Q |
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| T |
5433867 |
gaagaactttagtgctaactttgaacttaacgtggtctcagaacaatgtacctta |
5433921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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