View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_33 (Length: 347)
Name: NF3804_low_33
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 29008966 - 29009272
Alignment:
| Q |
18 |
ttaactatagcttcgattcaaattcttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
29008966 |
ttaactatagcttcgattcaaattcttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgta |
29009065 |
T |
|
| Q |
118 |
gcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29009066 |
gcgtgcaaatgcaaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacc |
29009165 |
T |
|
| Q |
218 |
tatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatttggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29009166 |
tatatgatctttgcgcggttgaagagtttgttatgaattcagaacagagaatgtggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaa |
29009265 |
T |
|
| Q |
318 |
gaagaag |
324 |
Q |
| |
|
||||||| |
|
|
| T |
29009266 |
gaagaag |
29009272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University