View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_34 (Length: 345)
Name: NF3804_low_34
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 5884737 - 5884525
Alignment:
| Q |
18 |
gtatagcatttgcagcaatagatatatataaaaaattacttaccactataagtcctttgatgatttggtccgtataatattcgggttgtgattgttgctg |
117 |
Q |
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| T |
5884737 |
gtatagcatttgcagcaatagatatatataaaaaattacttaccaccataagtcctttgatgatttggtccgtataatattcgggttgtgattgttgctg |
5884638 |
T |
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| Q |
118 |
tgttaagagatgatcaatcatagtgttactattcctctttccaaaacgatgttcatcaataagcccttgtaaaaatgcatcggttctcttactaatcttc |
217 |
Q |
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| T |
5884637 |
tgttaagagatgatcaatcatagtgttactattcctctttccaaaacgatgttcatcaataagcccttgtaaaaatgcatcggttctcttactaatcttc |
5884538 |
T |
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| Q |
218 |
ttaagcctctttt |
230 |
Q |
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| T |
5884537 |
ttaagcctctttt |
5884525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 280 - 339
Target Start/End: Complemental strand, 5884475 - 5884416
Alignment:
| Q |
280 |
gttgttagctcctcctaaactaacaacctctttaattatccctctaaacaaccttgcttc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5884475 |
gttgttagctcctcctaaactaacaacctctttaattatccctctaaacaaccttgcttc |
5884416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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