View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_35 (Length: 345)
Name: NF3804_low_35
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_35 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 1500065 - 1499746
Alignment:
| Q |
17 |
taacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
1500065 |
taacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcattcaagatgaacaatacagatgcacta |
1499966 |
T |
|
| Q |
117 |
gacatattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499965 |
gacatattaccatattcactaagcacttccctaacgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccac |
1499866 |
T |
|
| Q |
217 |
ccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatctcaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1499865 |
ccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatctcaga |
1499766 |
T |
|
| Q |
317 |
gacatccttatgagtattat |
336 |
Q |
| |
|
|||||||||| || |||||| |
|
|
| T |
1499765 |
gacatccttacgaatattat |
1499746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 1478823 - 1478530
Alignment:
| Q |
18 |
aacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactag |
117 |
Q |
| |
|
||||| |||||||| || | |||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || | || | |
|
|
| T |
1478823 |
aacaacacaccccagtcaaggccttcacctgtggttttaagtccctcttgagccgatttctttctcatctcatccaagatgaacaatacacatgcgcttg |
1478724 |
T |
|
| Q |
118 |
acatattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacc |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| | || ||| ||||||| ||| ||||||||||||| |||| ||| ||||||||||| || ||||| |
|
|
| T |
1478723 |
acatgttaccatattcactaagtacttccctagtggccttcattttttcaggttttaagcctaacttttcttcaacttggtctagaattgcgggtccacc |
1478624 |
T |
|
| Q |
218 |
cggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||| ||||||||| || ||||| || | | |||||||||| |||||||| |||||| |
|
|
| T |
1478623 |
tgggtgagcaatccagaagattgaattataatcagagatgtttaatggttggaaagcctcgaccaatgctttatcaatgttctttgaaacaatc |
1478530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 1483017 - 1482724
Alignment:
| Q |
18 |
aacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactag |
117 |
Q |
| |
|
||||| |||||||| || | ||||| |||||||||||||| | ||||||| |||||| ||| ||||||||| ||||| |||||||| || |||| | |
|
|
| T |
1483017 |
aacaacacaccccaatcaagcccttctcctgtggtcttaagcccctcttgagaagatttctttcgcatctcatctaagataaacaatacacatgcacttg |
1482918 |
T |
|
| Q |
118 |
acatattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacc |
217 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||| | | ||| |||||||| ||| |||||||||||||| |||| |||||| |||||||| || ||||| |
|
|
| T |
1482917 |
acatgttaccatattcactaagtacttctctagtggctttcatcttttcaggttttaagcctaacttttgttcaacttgatcaagaattgcgggtccacc |
1482818 |
T |
|
| Q |
218 |
cggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || ||||||||| || || || | | | |||||||||| |||||||| |||||| |
|
|
| T |
1482817 |
tggatgagcaatccaaaagattgagttgtaatcagaaatgtttaatggttggaaagcatcgatcaatgctttatcaatgttctttgaaacaatc |
1482724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 1492986 - 1492699
Alignment:
| Q |
24 |
acaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatat |
123 |
Q |
| |
|
||||||||||| || ||||| || || ||||| | | || |||||| |||||| ||||||| ||||||||||| |||||||| || |||| ||||||| |
|
|
| T |
1492986 |
acaccccattcatgcccttctccggttgtcttcaaaccattttgagttgatttctttctcatttcatccaagataaacaatacacatgcacttgacatat |
1492887 |
T |
|
| Q |
124 |
taccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatg |
223 |
Q |
| |
|
| ||||||||||| ||||| |||| | | | |||| |||||| | || ||| ||||||||||||| | ||| |||| ||||||||| ||||| || || |
|
|
| T |
1492886 |
ttccatattcacttagcacctcccgtgtggctctcatcttttcgggctttaaggctaacttttgctctacttggtctaaaattgcaggtccaccagggtg |
1492787 |
T |
|
| Q |
224 |
agcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| || |||||||||| | |||||| ||||| ||||| |||||| |
|
|
| T |
1492786 |
tgcaatccaaaagattgagttgtaatcagagattcccaatggttggaaagcctcaactaatgctttatttatattttttgacacaatc |
1492699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 1505795 - 1505504
Alignment:
| Q |
24 |
acaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatat |
123 |
Q |
| |
|
||||||||||| |||||||| || || ||||| | || |||||||| |||||| ||||||| ||||| ||||| ||||| || || |||| ||||||| |
|
|
| T |
1505795 |
acaccccattcatgtccttctccggtagtcttcaatccatcttgagctgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatat |
1505696 |
T |
|
| Q |
124 |
taccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatg |
223 |
Q |
| |
|
| |||||||||||||||||||| |||| | | ||| |||||||| || ||| ||||||||||||| | |||||||| ||||||||| ||||| || || |
|
|
| T |
1505695 |
ttccatattcactaagcacttctctagtggctttcatcttttcaggctttaaggctaacttttgctctacttgatctaaaattgcagggccaccagggtg |
1505596 |
T |
|
| Q |
224 |
agcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatctcag |
315 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | |||||||||||| || || ||||| | | |||||| || |||||||| ||||| |||| |
|
|
| T |
1505595 |
tgcaatccagaagattgagttgtagtcagaaactcctaatggttggaaagcatcaaccaatgctttattgatgttctttgaaacaatttcag |
1505504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 322
Target Start/End: Complemental strand, 1487475 - 1487190
Alignment:
| Q |
37 |
gtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatattaccatattcact |
136 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||| ||| || ||||||| |||||||| || |||||||| | |||| ||||| |||||||||||||| |
|
|
| T |
1487475 |
gtccttctcctgtggtctcaagtccctcttgagctgatctctttctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcact |
1487376 |
T |
|
| Q |
137 |
aagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaag |
236 |
Q |
| |
|
||| |||||||||| | || ||| |||||| | |||||| |||||||||| |||| || || | ||||||||| || || || || |||||||||| |
|
|
| T |
1487375 |
aagtacttccctagtggccttcatcttttccggtttcaaagctaacttttgttcaacatggtccaaaattgcaggtccgcctgggtggacaatccaaaaa |
1487276 |
T |
|
| Q |
237 |
attgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatctcagagacatc |
322 |
Q |
| |
|
|||| || ||||||||||| ||||||||||| ||||||| ||||||| ||||||| || |||||||||| ||| |||| |||||| |
|
|
| T |
1487275 |
attgcattgtaatcagagatgcctaatggttggaatgccttaactagttctttatcgatgttctttgagataatttcagggacatc |
1487190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 1509928 - 1509644
Alignment:
| Q |
27 |
ccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatattac |
126 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || ||||||| |||||| |||||||||| || |||||||||||||| || |||| |||||||||| |
|
|
| T |
1509928 |
ccccattcaagtccttcaccaatggtcttaattccctcttgagctgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatattac |
1509829 |
T |
|
| Q |
127 |
catattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagc |
226 |
Q |
| |
|
||||||||||||| | || ||| ||| | |||||| ||| ||| |||| |||||||||| ||| || | |||||| | ||| | || ||||| |
|
|
| T |
1509828 |
catattcactaag-aattgcct--------tcatc-tttcaggttttaaggctaatttttgctcaacttggtcaataattgcggctccatctgggtgagc |
1509739 |
T |
|
| Q |
227 |
aatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatctcagagacatc |
322 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||| ||| |||||| || ||||||||| || |||||||||| |
|
|
| T |
1509738 |
aatccaaaatattgagttgtaatcagagatgtttaatggttgaaatgcctcaatcagtgcttaatcaatgtt-tttgagacagtcacagagacatc |
1509644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 1496160 - 1496085
Alignment:
| Q |
174 |
aagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaagattgagttataat |
249 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||||||||| ||||||| ||| |||| |
|
|
| T |
1496160 |
aagcctaacttgtgctcaacttgatctataattgcaggtccactcggatgagcaatccagaagattgggttgtaat |
1496085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 24163087 - 24163380
Alignment:
| Q |
17 |
taacaatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacacta |
116 |
Q |
| |
|
|||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| |||||| ||||||||||||| |||||||| ||||| || |||| |
|
|
| T |
24163087 |
taacaacacaccccattcaagcccttctcctgtggtctttagtccatcttgagccgatttgtttctcatctcatctaagatgaataatacacatgcactt |
24163186 |
T |
|
| Q |
117 |
gacatattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccac |
216 |
Q |
| |
|
||||| ||||||||||||||||||| || |||| | | |||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| || |||| |
|
|
| T |
24163187 |
gacatgttaccatattcactaagcatttttctagtggcactcatcttttcaggtttcaaggctaacttttcctcaattttgtctagaattgcgggtccac |
24163286 |
T |
|
| Q |
217 |
ccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaat |
310 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
24163287 |
cagagtgagcaatccaaaagattgagttgtaatcagagatacctaatggttggaatgcctcaaacaatgctttatcaatattctttgagacaat |
24163380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 46706292 - 46706579
Alignment:
| Q |
24 |
acaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatat |
123 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| || | ||||||||| |||||| ||||||| ||||| ||||| ||||| || || |||| ||||||| |
|
|
| T |
46706292 |
acaccccattcaagtccttctcctgttgtcttcagaccatcttgagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatat |
46706391 |
T |
|
| Q |
124 |
taccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatg |
223 |
Q |
| |
|
| |||||||||||||||||||| |||| | | |||| |||||||| |||||| ||||||||||||| | |||||||| ||||||||| ||||| || || |
|
|
| T |
46706392 |
ttccatattcactaagcacttctctagtggctctcatcttttcaggcttcaaggctaacttttgctctacttgatctaaaattgcagggccaccagggtg |
46706491 |
T |
|
| Q |
224 |
agcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||| | |||||||||| |||||||| |||||| |
|
|
| T |
46706492 |
tgcaatccaaaagattgagttgtaatcagaaattcccaatggttggaaagcctcaactaatgctttatcaatgttctttgaaacaatc |
46706579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 5285129 - 5284839
Alignment:
| Q |
21 |
aatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagaca |
120 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||| | || | |||||| |||||| ||||||| ||||||||||| ||||| || || |||| |||| |
|
|
| T |
5285129 |
aatacaccccattcaagtccttctcccgttgtcttcaatccgttttgagttgatttctttctcatttcatccaagataaacaaaacacatgcacttgaca |
5285030 |
T |
|
| Q |
121 |
tattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccgg |
220 |
Q |
| |
|
|||| ||||||||||| |||||||| || | | ||| |||||||| |||||| ||||||||||||| | |||||||||||||||||| ||||| || |
|
|
| T |
5285029 |
tatttccatattcactgagcacttctctggttgcattcatcttttcaggcttcaaggctaacttttgctctacttgatctagaattgcaggtccaccggg |
5284930 |
T |
|
| Q |
221 |
atgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||| ||||| | ||| |||||||| | | ||||| ||| |||||||| |||||| |
|
|
| T |
5284929 |
atgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcaaaagcctcaaccaatgctttagtaatgttctttgaaacaatc |
5284839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 5311218 - 5310928
Alignment:
| Q |
21 |
aatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagaca |
120 |
Q |
| |
|
||||||||||| || ||||||| || || ||||| | || | |||||| |||||| ||||||| ||||| ||||| ||||| || || |||| |||| |
|
|
| T |
5311218 |
aatacaccccactcaagtccttctcccgttgtcttcaatccgttttgagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgaca |
5311119 |
T |
|
| Q |
121 |
tattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccgg |
220 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| | ||| |||||||| || ||| ||||||||||||| | |||||||||||||||||| ||||| || |
|
|
| T |
5311118 |
tatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctctacttgatctagaattgcaggtccaccggg |
5311019 |
T |
|
| Q |
221 |
atgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||| ||||| | || |||||||| | | ||||| ||| ||||||||||||||| |
|
|
| T |
5311018 |
atgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaatgttctttgagacaatc |
5310928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 311
Target Start/End: Complemental strand, 5315932 - 5315642
Alignment:
| Q |
21 |
aatacaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagaca |
120 |
Q |
| |
|
|||||||||||||| ||||||| || || ||||| | || |||| ||| |||||| ||||||| ||||| ||||| ||||| || | |||| |||| |
|
|
| T |
5315932 |
aatacaccccattcaagtccttctcccgttgtcttcaatccgtctttagttgatttctttctcatttcatctaagataaacaaaacacacgcacttgaca |
5315833 |
T |
|
| Q |
121 |
tattaccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccgg |
220 |
Q |
| |
|
|||| ||||||||||| |||||||| |||| | ||| |||||||| || ||| ||||||||||||| | |||||||||||||||||| ||||| || |
|
|
| T |
5315832 |
tatttccatattcactgagcacttctctagttgcattcatcttttcaggctttaaggctaacttttgctccacttgatctagaattgcaggtccaccggg |
5315733 |
T |
|
| Q |
221 |
atgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| ||||| ||||| | || |||||||| | | ||||| ||| |||||||| |||||| |
|
|
| T |
5315732 |
atgtgcaatccaaaagattgagttgtaatcagaaattcccaatggctcgaaagcctcaaccaatgctttagtaatgttctttgaaacaatc |
5315642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 265
Target Start/End: Original strand, 5289049 - 5289242
Alignment:
| Q |
72 |
gatttccttctcatctcatccaagatgaacaatacggatacactagacatattaccatattcactaagcacttccctagcgaccctcaacttttcagctt |
171 |
Q |
| |
|
|||||| ||||||| ||||| ||||| ||||| || || |||| |||||||| ||||||||||| |||||||| |||| | ||| |||||||| | |
|
|
| T |
5289049 |
gatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcacttctctagttgcattcatcttttcaggct |
5289148 |
T |
|
| Q |
172 |
tcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaagattgagttataatcagagattcctaatgg |
265 |
Q |
| |
|
| ||| ||||||||||||| | |||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
5289149 |
ttaaggctaacttttgctccacttgatctagaattgcaggtccaccgggatgtgcaatccaaaagattgagttgtaatcagaaattcccaatgg |
5289242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 5303314 - 5303079
Alignment:
| Q |
24 |
acaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatat |
123 |
Q |
| |
|
||||||||||| ||||||| || || ||||| | | ||||| ||| |||||| ||||||| ||||| ||||| ||||| || || |||| ||||||| |
|
|
| T |
5303314 |
acaccccattcaagtccttctccagttgtcttcaacccatctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatat |
5303215 |
T |
|
| Q |
124 |
taccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatg |
223 |
Q |
| |
|
| ||||||||||| |||||||| |||| | ||| |||||||| ||||| |||||||||||| | |||||||||||||||||| ||||| ||||| |
|
|
| T |
5303214 |
ttccatattcactgagcacttctctagttgcattcatcttttcaggcttcaatgataacttttgctctacttgatctagaattgcaggtccaccgggatg |
5303115 |
T |
|
| Q |
224 |
agcaatccaaaagattgagttataatcagagattcc |
259 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |
|
|
| T |
5303114 |
tgcaatccaaaagattgagttgtaatcagaaattcc |
5303079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 37 - 311
Target Start/End: Complemental strand, 44133584 - 44133310
Alignment:
| Q |
37 |
gtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatattaccatattcact |
136 |
Q |
| |
|
||||||| ||||||||||| | || |||||||| || ||| ||||||| ||||| ||||| ||||| || | |||| |||||||| ||||||||||| |
|
|
| T |
44133584 |
gtccttctcctgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact |
44133485 |
T |
|
| Q |
137 |
aagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaag |
236 |
Q |
| |
|
||||||||| || | | | ||| |||||||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
44133484 |
aagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcaggtccaccagggtgtgcaatccaaaag |
44133385 |
T |
|
| Q |
237 |
attgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
||||| || |||||||| ||||||||||||| || |||||||| | | |||||| || |||||||| |||||| |
|
|
| T |
44133384 |
attgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttgaaacaatc |
44133310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 44129392 - 44129136
Alignment:
| Q |
24 |
acaccccattcttgtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatat |
123 |
Q |
| |
|
|||||||| || ||||||| || |||||||| |||| |||||||| || ||| ||||||| ||||| ||||| ||||| || | |||| ||||||| |
|
|
| T |
44129392 |
acaccccactcaagtccttctcccgtggtcttcagtccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaagcacttgacatat |
44129293 |
T |
|
| Q |
124 |
taccatattcactaagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatg |
223 |
Q |
| |
|
| |||||||||||||||||||| || | | | ||| |||||||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||| || || |
|
|
| T |
44129292 |
ttccatattcactaagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcaggtccaccagggtg |
44129193 |
T |
|
| Q |
224 |
agcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaac |
280 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||| || |||||||| |
|
|
| T |
44129192 |
tgcaatccaaaagattgaattgtaatcagaaattcctaatggttcgaaagcctcaac |
44129136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 311
Target Start/End: Complemental strand, 44142006 - 44141732
Alignment:
| Q |
37 |
gtccttcacctgtggtcttaagtcgatcttgagtcgatttccttctcatctcatccaagatgaacaatacggatacactagacatattaccatattcact |
136 |
Q |
| |
|
||||||| || |||||||| | || |||||||| || ||| ||||||| ||||| ||||| ||||| || | |||| |||||||| ||||||||||| |
|
|
| T |
44142006 |
gtccttctcccgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccatattcact |
44141907 |
T |
|
| Q |
137 |
aagcacttccctagcgaccctcaacttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaag |
236 |
Q |
| |
|
||||||||| || | | | ||| |||||||| ||| ||| ||||||||||||||| |||||||||||||||||| ||||| || || |||||||||||| |
|
|
| T |
44141906 |
aagcacttctctggtggctttcatcttttcaggttttaaggctaacttttgctcaacttgatctagaattgcaggtccaccagggtgtgcaatccaaaag |
44141807 |
T |
|
| Q |
237 |
attgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattctttgagacaatc |
311 |
Q |
| |
|
||||| || |||||||| ||||||||||||| || |||||||| | | |||||| || |||||||| |||||| |
|
|
| T |
44141806 |
attgaattgtaatcagaaattcctaatggttcgaaagcctcaaccaatgctttattgatgttctttgaaacaatc |
44141732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 35251491 - 35251404
Alignment:
| Q |
162 |
ttttcagctttcaagcctaacttttgctcaatttgatctagaattgcaggaccacccggatgagcaatccaaaagattgagttataat |
249 |
Q |
| |
|
||||||| |||||||||||||| | ||||| ||| || ||||| || || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35251491 |
ttttcaggcttcaagcctaacttgtcctcaacttggtcaagaatcgctggtccacccgtgtgagcaatccaaaagattgagttataat |
35251404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 37858845 - 37858950
Alignment:
| Q |
201 |
agaattgcaggaccacccggatgagcaatccaaaagattgagttataatcagagattcctaatggttgaaatgcctcaactagtactttatcaatattct |
300 |
Q |
| |
|
|||||||| || ||||| || || || ||||||||||| || || ||||||||||| ||||| |||||||| |||||| | || |||| ||||| |||| |
|
|
| T |
37858845 |
agaattgctggtccaccagggtgtgcgatccaaaagatggaattgtaatcagagatacctaaaggttgaaaggcctcagcaagagctttctcaatgttct |
37858944 |
T |
|
| Q |
301 |
ttgaga |
306 |
Q |
| |
|
|||||| |
|
|
| T |
37858945 |
ttgaga |
37858950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 39030838 - 39030774
Alignment:
| Q |
75 |
ttccttctcatctcatccaagatgaacaatacggatacactagacatattaccatattcactaag |
139 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
39030838 |
ttcctcctcatctcatccaaaatgaataacacggatggacttgacatgttaccatactcactaag |
39030774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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