View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_low_37 (Length: 330)

Name: NF3804_low_37
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_low_37
NF3804_low_37
[»] chr5 (2 HSPs)
chr5 (1-319)||(19598905-19599221)
chr5 (208-300)||(13951852-13951946)
[»] chr7 (3 HSPs)
chr7 (1-326)||(21944826-21945151)
chr7 (94-292)||(23252986-23253178)
chr7 (1-63)||(23252913-23252975)
[»] chr4 (2 HSPs)
chr4 (1-300)||(17382124-17382423)
chr4 (3-300)||(13096012-13096288)
[»] chr1 (3 HSPs)
chr1 (1-300)||(38202186-38202484)
chr1 (94-292)||(4753642-4753834)
chr1 (1-63)||(4753569-4753631)
[»] chr2 (1 HSPs)
chr2 (1-116)||(41543793-41543908)
[»] chr8 (2 HSPs)
chr8 (94-292)||(42916102-42916294)
chr8 (1-63)||(42916029-42916091)
[»] chr3 (2 HSPs)
chr3 (94-292)||(53534629-53534821)
chr3 (1-54)||(53534843-53534896)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 19598905 - 19599221
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgat 100  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19598905 tcccaaattcctcaaactccaaggcaatgaattcacacggttccttctctctcttcaattgcactaccaaggcaatgaaataatgaaacaatccaacgat 19599004  T
Q  101 acctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnncctccaatttgttttatgaaaatatttcaagtttccctcc 200  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||||        ||||||||||| || |||||||||||||||||||||||||    
T  19599005 acctttttctctctttctcccgtgtaaaaacttgaaaaaattcatttgatttaaaaaaaacctccaatttg-ttcatgaaaatatttcaagtttccctcc 19599103  T
Q  201 nnnnnnnttagtatgtggctgttcttttttcctatgattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctttt 300  Q
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19599104 aaaaaaattagtatgtggctgttc-tttttcctatgattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctttt 19599202  T
Q  301 gatacatgtttgaatgatg 319  Q
    |||||||||||||||||||    
T  19599203 gatacatgtttgaatgatg 19599221  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 300
Target Start/End: Original strand, 13951852 - 13951946
Alignment:
Q  208 ttagtatgtggctgttcttttttcctatga--ttaagattattgaactaaacaaa-aacataccaatatgacttcaaatcatgaatcttctctttt 300  Q
    ||||||||||||||||||||||| |||| |  | |||| |||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||    
T  13951852 ttagtatgtggctgttcttttttgctataaattaaagactattgaactaaacaaagaacataccaat-tgacttcagatcatgaagcttctctttt 13951946  T

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Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 21944826 - 21945151
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgat 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||| ||||||| |||||||||||||||||||| |||||||    
T  21944826 tcccaaattcctccaactccaaggcaatgaattcacacggttccttctctatcttccattgcattaccaaggcaatgaaataatgaaacaatgcaacgat 21944925  T
Q  101 acctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnncctccaatttgttttatgaaaatatttcaagtttccctcc 200  Q
    |||| | ||||||||||| ||||||||||| ||||||||||||||||||||         ||||||||||| || ||||||||||||||||||||||||     
T  21944926 acctctttctctctttcttccatgtaaaaacttgaaaaaattcatttgattaaaaaaaaacctccaatttg-ttcatgaaaatatttcaagtttccctct 21945024  T
Q  201 nnnnnnnttagtatgtggctgttcttttttcctatg-attaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctcttt 299  Q
           ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21945025 aaaaaaattagtgtgtggctgttcttttttcctatgaattaagattattgaactaaacaaaaacttaccaatatgacttcaaatcatgaatcttctcttt 21945124  T
Q  300 tgatacatgtttgaatgatgatgtcca 326  Q
    |||||||||||||||||| ||||||||    
T  21945125 tgatacatgtttgaatgaagatgtcca 21945151  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 23252986 - 23253178
Alignment:
Q  94 caacgatacctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnncc-tccaatttgttttatgaaaatatttcaagt 192  Q
    ||||||||||||| |||||||||||||||||||||     |||||||||||||||||||         | |||||||||||  |||||| | ||||||||    
T  23252986 caacgataccttt-tctctctttctcccatgtaaa-----gaaaaaattcatttgatttataaaaaaacatccaatttgttc-atgaaattttttcaagt 23253078  T
Q  193 ttccctccnnnnnnnttagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatc 291  Q
    ||||||||       ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23253079 ttccctccaacaaa-ttagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatc 23253177  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 23252913 - 23252975
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgca 63  Q
    ||||| |||||||||||||||||| |||||||||| |   |||||||||||||||||||||||    
T  23252913 tcccacattcctccaactccaaggcaatgaattcatatgattccttctctctcttcaattgca 23252975  T

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Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 17382423 - 17382124
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgat 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  17382423 tcccaaattcctccaactccaaggcaatgaattcacacggttccttctctctcttcaattgcagtaccaaggcaatgaaataatgaaacaatccaacgat 17382324  T
Q  101 acctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnncctccaatttgttttatgaaaatatttcaagtttccctcc 200  Q
    |||| | |  |||||||| ||||||||||| |||||||||||||||||||||        ||||| ||||| || |||||||||||||||||||||||||    
T  17382323 acctct-ttgctctttctgccatgtaaaaacttgaaaaaattcatttgatttaaaaaaaacctccgatttg-ttcatgaaaatatttcaagtttccctcc 17382226  T
Q  201 -nnnnnnnttagtatgtggctgttcttttttcctat-gattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctctt 298  Q
            ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17382225 aaaaaaaattagtatgtggctgttcttttttcctataaattaagattattgaactaaacaaaaacataccaatatgatttcaaatcatgaatcttctctt 17382126  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 13096288 - 13096012
Alignment:
Q  3 ccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgatac 102  Q
    ||||||||||||||||| |||| | ||||||||||| |||||||||||||||||||||||| ||||||| ||||||                     |||    
T  13096288 ccaaattcctccaactctaaggaattgaattcacacggttccttctctctcttcaattgcagtaccaaggcaatga---------------------tac 13096210  T
Q  103 ctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnncctccaatttgttttatgaaaatatttcaagtttccctccnn 202  Q
    || | ||||||||||||||||||||||| |||||||||| ||||||||||        |||||||||||||  |||||||||||||||||||||||||      
T  13096209 ctctttctctctttctcccatgtaaaaacttgaaaaaatccatttgatttaaaaaaaacctccaatttgttc-atgaaaatatttcaagtttccctccaa 13096111  T
Q  203 nnnnnttagtatgtggctgttcttttttc--ctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctcttt 299  Q
         |||||||||||||||||||||||   |||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  13096110 caaa-ttagtatgtggctgttctttttttttctataaattaagattattgaacaaaacaaaa-cataccaatatgacttcaaatcatgaatcttctcttt 13096013  T

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Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 38202484 - 38202186
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgat 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38202484 tcccaaattcctccaactccaaggcaatgaattcacacggttccttctctctcttcaattgcagtaccaagacaatgaaataatgaaacaatccaacgat 38202385  T
Q  101 acctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgattt---nnnnnnnncctccaatttgttttatgaaaatatttcaagtttccc 197  Q
    |||| | | ||||||||||||||||||||| |||||||||||||||||||||           ||||| ||||| |||||||||||||||||||||||||    
T  38202384 acctctttgtctctttctcccatgtaaaaacttgaaaaaattcatttgatttaaaaaaaaaaacctccgatttg-tttatgaaaatatttcaagtttccc 38202286  T
Q  198 tccnnnnnnnttagtatgtggctgttcttttttcctat-gattaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatcttctc 296  Q
    | |       ||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  38202285 ttcaaaaaaattagtatgtagctgtttttttttcctataaattaagattattgaactaaacaaaaacataccaatatgacttca----atgaatcttctc 38202190  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 4753642 - 4753834
Alignment:
Q  94 caacgatacctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnn-cctccaatttgttttatgaaaatatttcaagt 192  Q
    ||||||||||||| |||||||||||||||||||||     |||||||||||||||||||         |||||||||||||  |||||| | ||||||||    
T  4753642 caacgataccttt-tctctctttctcccatgtaaa-----gaaaaaattcatttgatttataaaaaaacctccaatttgttc-atgaaattttttcaagt 4753734  T
Q  193 ttccctccnnnnnnnttagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatc 291  Q
    ||||||||       ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  4753735 ttccctccaacaaa-ttagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttaaaatcatgaatc 4753833  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4753569 - 4753631
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgca 63  Q
    ||||| |||||||||||||||||| |||||||||| |   |||||||||||||||||||||||    
T  4753569 tcccacattcctccaactccaaggcaatgaattcatatgattccttctctctcttcaattgca 4753631  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 41543793 - 41543908
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgcactaccaagacaatgaaataatgaaacaatccaacgat 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||| ||| |||||||||||| |||||||||||||||    
T  41543793 tcccaaattcctccaactccaaggcaatgaattcacacggttccttctctctcttcaattggagtactaaggcaatgaaataataaaacaatccaacgat 41543892  T
Q  101 acctttctctctcttt 116  Q
    |||| | |||||||||    
T  41543893 acctctttctctcttt 41543908  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 42916102 - 42916294
Alignment:
Q  94 caacgatacctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnn-cctccaatttgttttatgaaaatatttcaagt 192  Q
    ||||||||||||| ||| |||||||||||||||||     |||||||||||||||||||         |||||||||||||  |||||| | ||||||||    
T  42916102 caacgataccttt-tctttctttctcccatgtaaa-----gaaaaaattcatttgatttataaaaaaacctccaatttgttc-atgaaattttttcaagt 42916194  T
Q  193 ttccctccnnnnnnnttagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatc 291  Q
    ||||||||       ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42916195 ttccctccaacaaa-ttagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatc 42916293  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42916029 - 42916091
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctcttcaattgca 63  Q
    ||||| |||||||||||||||||| |||||||||| |   |||||||||||||||||||||||    
T  42916029 tcccacattcctccaactccaaggcaatgaattcatatgattccttctctctcttcaattgca 42916091  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 292
Target Start/End: Complemental strand, 53534821 - 53534629
Alignment:
Q  94 caacgatacctttctctctctttctcccatgtaaaaatttgaaaaaattcatttgatttnnnnnnnn-cctccaatttgttttatgaaaatatttcaagt 192  Q
    ||||||||||||| |||||||||||||||||||||     |||||| ||||||||||||         |||||||||||||  |||||| | ||||||||    
T  53534821 caacgataccttt-tctctctttctcccatgtaaa-----gaaaaatttcatttgatttataaaaaaacctccaatttgttc-atgaaattttttcaagt 53534729  T
Q  193 ttccctccnnnnnnnttagtatgtggctgttcttttttcctatga-ttaagattattgaactaaacaaaaacataccaatatgacttcaaatcatgaatc 291  Q
    || |||||       ||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53534728 tttcctccaacaaa-ttagtatgtggctgttcattttttctataaattaagattattgaactaaacaaaaacatactaatatgacttcaaatcatgaatc 53534630  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53534896 - 53534843
Alignment:
Q  1 tcccaaattcctccaactccaaggtaatgaattcacacagttccttctctctct 54  Q
    ||||| |||||||||||||||||| |||||||||| |  |||||||||||||||    
T  53534896 tcccacattcctccaactccaaggcaatgaattcatatggttccttctctctct 53534843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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