View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_4 (Length: 651)
Name: NF3804_low_4
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Original strand, 38485684 - 38486304
Alignment:
| Q |
13 |
cagaactgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggcgagagggg |
112 |
Q |
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| T |
38485684 |
cagaactgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggcgagagggg |
38485783 |
T |
|
| Q |
113 |
atgatgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttagaggaatga |
212 |
Q |
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| T |
38485784 |
atgatgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttagaggaatga |
38485883 |
T |
|
| Q |
213 |
tgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgttccaacgaatcaaga |
312 |
Q |
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| T |
38485884 |
tgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgttccaacgaatcaaga |
38485983 |
T |
|
| Q |
313 |
tattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaagtttgttcaaaggccatgactatggaactgcattaatgaaa |
412 |
Q |
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| T |
38485984 |
tattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaagtttgttcaaaggccatgactatggaactgcattaatgaaa |
38486083 |
T |
|
| Q |
413 |
ttcacatatgtgattgcttgtcagatatatggaactcaaaaggcaagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaagccc |
512 |
Q |
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| T |
38486084 |
ttcacatatgtgatcgcttgtcagatatatggaactcaaaaggcaagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaagccc |
38486183 |
T |
|
| Q |
513 |
taagagttgcctatgttgatgaggttcgcacagggagggatgagaatgagaaggactattattctgttcttgttaagtatgaccaacagctggagaggga |
612 |
Q |
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| T |
38486184 |
taagagttgcctatgttgatgaggttcgcacagggagggatgagaatgagaaggactattattctgttcttgttaagtatgaccaacagctggagaggga |
38486283 |
T |
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| Q |
613 |
ggtggaaatataccgtgtaaa |
633 |
Q |
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| T |
38486284 |
ggtggaaatataccgtgtaaa |
38486304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 30120078 - 30120359
Alignment:
| Q |
17 |
actgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggcgagaggggatga |
116 |
Q |
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|||| ||||||||| ||| | ||||| || |||||| |||||||||| ||||| ||||| |||||||||||| ||||||| ||| | || |||||||||| |
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| T |
30120078 |
actgagaatgaagacggggtttcaaccctgtactatttgcagactatttatgatgatgagtggaagaattttctggagaggatgcgtcgggaggggatga |
30120177 |
T |
|
| Q |
117 |
tgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttagaggaatgatgta |
216 |
Q |
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| T |
30120178 |
tgaaagacagtgatctgtggactgataaacttagagatttgaggctgtgggcttcctaccgaggccaaacactatcgcggacagttagaggaatgatgta |
30120277 |
T |
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| Q |
217 |
ctactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgtt |
298 |
Q |
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|||||| |||||||||| | ||| | ||||| ||||||||||||||| | || || |||||||||||| || |||||| |
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| T |
30120278 |
ttactatcgggccctcaagatgttgacatttctggattctgcatcagaaatggacattcgagaaggctcacgcgagcttgtt |
30120359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 359 - 535
Target Start/End: Original strand, 30120432 - 30120611
Alignment:
| Q |
359 |
agcagtacagtaagtttgttc---aaaggccatgactatggaactgcattaatgaaattcacatatgtgattgcttgtcagatatatggaactcaaaagg |
455 |
Q |
| |
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|||||| ||||||||||||| |||||||| || ||||| ||||| || |||||||||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
30120432 |
agcagttcagtaagtttgttatttaaaggccacgagtatgggactgctttgatgaaattcacatatgtggttgcttgtcagatttatggaactcagaagg |
30120531 |
T |
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| Q |
456 |
caagaaaggatcctcatgccgatgaaattttgtatttaatgaaaaacaatgaagccctaagagttgcctatgttgatgag |
535 |
Q |
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|| |||||||| ||||| || |||||||||||| ||||||||||||||||||| || ||||||| ||||| |||||| |
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| T |
30120532 |
aaaagaaggatccccatgctgaggaaattttgtatctaatgaaaaacaatgaagctcttcgagttgcatatgtggatgag |
30120611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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