View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_40 (Length: 305)
Name: NF3804_low_40
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 47916511 - 47916695
Alignment:
| Q |
100 |
ttcaacctattcattaaaaataactaattatccacgttcattacaattacaattacaatgatgaatcatttaataagcagcaccaaaaacgatgaataag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47916511 |
ttcaacctattcattaaaaataactaattatccaagttcattacaattacaattacaatgatgaatcat---ataagcagcaccaaaaacgatgaataag |
47916607 |
T |
|
| Q |
200 |
agagaatgaagagagagaaagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttc |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47916608 |
agagaatgaagagagagaaagtgagtaactggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttc |
47916695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 11782659 - 11782566
Alignment:
| Q |
198 |
agagagaatgaagagagagaaagtgagtaact----ggtttgaagctttttgtgaagcttgttgattttagagagaacatcttcatgaactttc |
287 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
11782659 |
agagagaaagaagagagagaaagtgagtaactaactggtttgaagctttttgtgaagcttgttgatttcagagagaacatcttcctgatctttc |
11782566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University