View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_41 (Length: 302)
Name: NF3804_low_41
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 5701888 - 5702142
Alignment:
| Q |
1 |
cttgtaaaagaagaaggagaataataataattataagggataaaaccattcaagtcgttttaatttgtgttaatgataccacgtacaaatgcaatgaagc |
100 |
Q |
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| T |
5701888 |
cttgtaaaagaagaaggagaataataataattataagggataaaaccattcaggtcgttttaatttgtgttaatgatatcacgtacaaatgcaatgaagc |
5701987 |
T |
|
| Q |
101 |
atgacatgttgattaagcttgtaataggagcattagcctaaattactattgtagtcgttttcactgagatatatgtacgtaagtgaagcacccacttaag |
200 |
Q |
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| T |
5701988 |
atgacatcttgattaagcttgtaataggagcattagcctaaattactattgtagtcgttttcactgagatatatgtacgtaagtgaagcacccacttaag |
5702087 |
T |
|
| Q |
201 |
gttgttttttgcagtcacgaagcctttaattcccgttagaattattcctcattaat |
256 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5702088 |
gttg-tttttgcagtcacgaagcctttaattcccgttggaattattcctcattaat |
5702142 |
T |
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