View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_43 (Length: 272)
Name: NF3804_low_43
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_43 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 1328904 - 1329014
Alignment:
| Q |
150 |
tcgttgtaagatccacaccagtgcgtgaaatgaagttagagcaaattttttccaaaatgcagcatatgcaattgcttcttgaacgctttttagcttgtcg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1328904 |
tcgttgtaagatccacaccagtgcgtgaaatgaagttagagcaaattttttccaaaatgcagcatttgcaattgcttcttgaacgctttttagcttgtcg |
1329003 |
T |
|
| Q |
250 |
ccccacaggtt |
260 |
Q |
| |
|
||||||||||| |
|
|
| T |
1329004 |
ccccacaggtt |
1329014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 1328752 - 1328821
Alignment:
| Q |
16 |
atatttggatgagaggcttgagtacaagatgcaaagtcggcgtggaaagcgtagcgtgcttggctatgac |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |
|
|
| T |
1328752 |
atatttggatgagaggcttgagtacaagatgcaaagtcggcgtggaaagcgtagcatgtttggttatgac |
1328821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University