View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_45 (Length: 269)
Name: NF3804_low_45
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 24616210 - 24616478
Alignment:
| Q |
1 |
aggctaaaaatccgctcctctgccatggtatccaaaaataagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttgat |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616210 |
aggctaaaaatccgcccctctgccatggtatccaaaaataagtgcaagctgttctccaaactgtcattacaaagaggattcacaacattgcaactttgat |
24616309 |
T |
|
| Q |
101 |
ggtagtagcttgttgttggaggatccactttagtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaatta |
191 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
24616310 |
ggcagtagcttgttgttggaggatccactttagtggcttttccgttccatcgcctacaactacgatagcaggttatcatttttttttcataattaaatta |
24616409 |
T |
|
| Q |
192 |
gcaatctctttgtttatttattctgacattcacttcattaatattttcttgggacaggattctgatgat |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24616410 |
gcaatctctttgtttatttattctgacattcacttcattaatattttcttgggacaggattcttatgat |
24616478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24107892 - 24107655
Alignment:
| Q |
1 |
aggctaaaaatccgctcctctgccatggtatccaaaaa-taagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttga |
99 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||| |||| ||||||||||| || |
|
|
| T |
24107892 |
aggccaaaaatccgaccctctgccatgtcatccaaaaaataagtgcaagctgtcct--aaactgtcattacaaagaggatgcacagcattgcaacttcga |
24107795 |
T |
|
| Q |
100 |
tggtagtagcttgttgttg-gaggatccactttagtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaat |
189 |
Q |
| |
|
| | ||||||||||| ||| |||| ||||||||| || ||||| ||||||| ||||| ||||||||||||| |||| |||||| |
|
|
| T |
24107794 |
tagcagtagcttgttcttgagagggtccactttacccgcgtttcc-ttccatcacctacaactttgatagcaggttatcattattttttcatacttaaat |
24107696 |
T |
|
| Q |
190 |
tagcaatctctttgtttatttattctgacattcacttcatt |
230 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
24107695 |
taacaatctctttgtttatttgttctgacatttacttcatt |
24107655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24114549 - 24114471
Alignment:
| Q |
1 |
aggctaaaaatccgctcctctgccatggtatccaaaaataagtgcaagctgttcttcaaactgtcattacaaagaggat |
79 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||| | ||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
24114549 |
aggccaaaaatccgcccctctgccatggtatcagaaaatatgcgcaagatgtcctccaaactgtcattacaaagaggat |
24114471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 24114407 - 24114366
Alignment:
| Q |
180 |
ataattaaattagcaatctctttgtttatttattctgacatt |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
24114407 |
ataattaaattaacaatctctttgtttatttattcttacatt |
24114366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University