View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_48 (Length: 250)
Name: NF3804_low_48
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_48 |
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| [»] scaffold0096 (2 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 44479 - 44719
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacattaatgagcaactaactactactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44479 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctcctaaatcatcacattaatgagcaactaactactactta |
44578 |
T |
|
| Q |
101 |
acattgtcttcatcaatttaattatgcacgttttttgctacttaaagccataccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44579 |
acattgtcttcaccaatttaattatgcacgttttttgctacttaaagccatgccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
44678 |
T |
|
| Q |
201 |
gaagtatttagttgctcaaagtgtttagttgcacacctttg |
241 |
Q |
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| T |
44679 |
gaagtgtttagttgctcaaagtgtttagttgcacacctttg |
44719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33752 - 33992
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacattaatgagcaactaactactactta |
100 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
33752 |
ctaatggagccctaacaccttaaaatgacaaatttaaccttgaatatgaagttatttccctcctaaatcatcacattaatgagcaactaactactattta |
33851 |
T |
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| Q |
101 |
acattgtcttcatcaatttaattatgcacgttttttgctacttaaagccataccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
200 |
Q |
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| T |
33852 |
acattgtcttcaccaatttaattatgcgcgttttttcctacttaaagtcatgccaacaataaatgcaaacatgaaaaaacgtgcaagacacggggctcta |
33951 |
T |
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| Q |
201 |
gaagtatttagttgctcaaagtgtttagttgcacacctttg |
241 |
Q |
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| T |
33952 |
gaagtgtttagttgctcaaagtgtttagttgcacacctttg |
33992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 38862412 - 38862172
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacattaatgagcaactaactactactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38862412 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtgatttccctcctaaatcatcacattaatgagcaactaactactactta |
38862313 |
T |
|
| Q |
101 |
acattgtcttcatcaatttaattatgcacgttttttgctacttaaagccataccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38862312 |
acattgtcttcaccaatttaattatgcacgttttttgctacttaaagccatgccaataataaatgcaaacatgaaaaaacatgcaagacgcggggctcta |
38862213 |
T |
|
| Q |
201 |
gaagtatttagttgctcaaagtgtttagttgcacacctttg |
241 |
Q |
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| T |
38862212 |
gaagtgtttagttgctcaaagtgtttagttgcacacctttg |
38862172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 10613970 - 10614027
Alignment:
| Q |
5 |
tgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctcc |
63 |
Q |
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|||||||||||||||| |||||||||| |||| || ||||||| |||| |||||||||| |
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| T |
10613970 |
tgcagccctaacaccc-aaaatgacaagtttatccctgaatatcaagtcatttccctcc |
10614027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31145260 - 31145499
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacattaatgagcaactaactactactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
31145260 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtcatttccctcctaaatcatcacatta-tgagcaactaactactactta |
31145358 |
T |
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| Q |
101 |
acattgtcttcatcaatttaattatgcacgttttttgctacttaaagccataccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31145359 |
acattgtcttcaccaatttaattatgcacgtttttttgtacttaaagtcatgccaataataaatgcaaacatgaaaaaacgtgcaagacacggggctcta |
31145458 |
T |
|
| Q |
201 |
gaagtatttagttgctcaaagtgtttagttgcacacctttg |
241 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
31145459 |
taagtgtttagttgctcaaagtgtttagttgcacacctttg |
31145499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 28322882 - 28322668
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacattaatgagcaactaactactactta |
100 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||||| |||||||| | |||| |||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
28322882 |
ctaatgcagccctaacatcctaaaatgataaatttaaccttcaatatgaaatcattttcctcctaaatcatcacattaatgagcaactaattactactta |
28322783 |
T |
|
| Q |
101 |
acattgtcttcatcaatttaattatgcacgttttttgctacttaaagccataccaataataaatgcaaacatgaaaaaacgtgcaagacgcggggctcta |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
28322782 |
acattgtcttcaccaatttaattatgcacgttttttgctacttaaagtcatgccaataataaatgcaaacatgaaaaaatgtgcaagacgcgggactcta |
28322683 |
T |
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| Q |
201 |
gaagtatttagttgc |
215 |
Q |
| |
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||||| ||||||||| |
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| T |
28322682 |
gaagtgtttagttgc |
28322668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22151644 - 22151721
Alignment:
| Q |
1 |
ctaatgcagccctaacaccctaaaatgacaaatttaaccttgaatatgaagtaatttccctccttaatcatcacatta |
78 |
Q |
| |
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|||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |
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| T |
22151644 |
ctaatgaagccctaacacactaaaatgacaaatttaaccttgaataagaagtcatttccctcctaaatcatcacatta |
22151721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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