View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_51 (Length: 246)
Name: NF3804_low_51
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 48290909 - 48291088
Alignment:
| Q |
1 |
tgttgatattctcaaaaacattgaatgatttgtgataattttatttcataataacgatttactgnnnnnnnnnnnnagaaacaagaaggttgtgttgtta |
100 |
Q |
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| T |
48290909 |
tgttgatattctcaaaaacgttgaatgatttgtgataattttatttcataataacaaattattgttttttatttttagaaacataaaggttgtgttgtta |
48291008 |
T |
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| Q |
101 |
gttgttgtgtcaagtgattgtatgtgtgggtcaagagagaaacgatttgtaatatgtgt-ggatgtatagtcaaaatatc |
179 |
Q |
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| T |
48291009 |
cttgttgtgtcaagtgattgtatgtgtgggtcaagatagaaaagatttgtaatatatgtgggctatatagtcaaaatatc |
48291088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21647434 - 21647389
Alignment:
| Q |
1 |
tgttgatattctcaaaaacattgaatgatttgtgataattttattt |
46 |
Q |
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| T |
21647434 |
tgttgatattctcgaaaacattgaatgatttatgataattttattt |
21647389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 20727756 - 20727574
Alignment:
| Q |
1 |
tgttgatattctcaaaaacattgaatgatttgtgataattttatttcataataacgatttactgnnnnnnnnnnnnagaaacaagaaggttgtgttgtta |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| || ||||| | |||||||||||||||| |
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| T |
20727756 |
tgttgatattctcaaaaacattaaatgatttgtgataattttatttcataataataaattattgttttttatttttagaaatatgaaggttgtgttgtta |
20727657 |
T |
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| Q |
101 |
gttgttgtgtcaagtg--attgtatgtgtgggtcaagagag-aaacgatttgtaatatgtgt-ggatgtatagtcaaaatatc |
179 |
Q |
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| T |
20727656 |
cttgttgtgtcaagtgtgattgtatgtgtgggtcaagagagaaaaagatttgtaacatgtgtaggatatatagtcaaaatatc |
20727574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 28954509 - 28954469
Alignment:
| Q |
6 |
atattctcaaaaacattgaatgatttgtgataattttattt |
46 |
Q |
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||||||| |||||||||||||||||| |||||||||||||| |
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| T |
28954509 |
atattcttaaaaacattgaatgatttatgataattttattt |
28954469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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