View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_52 (Length: 244)
Name: NF3804_low_52
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 16046897 - 16046715
Alignment:
| Q |
1 |
gcaacgtattatttcataagaatatttagaaaataaaaaatattagatagaattactaccttgaggacgaagagaaccttctccaccagcctatagagat |
100 |
Q |
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| T |
16046897 |
gcaacgtattatttcataagaatatttagaaaataaaaaatattagatagaattactaccttgaggacgaagagaaccttctccaccagcctatagagat |
16046798 |
T |
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| Q |
101 |
atttttttgcatttacaatagaaagttnnnnnnnnnnnnnnttcagatttcagtgttaatttaaggggaaaacaaataaatgaa |
184 |
Q |
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| T |
16046797 |
atattttttcatttacaatagaaagttaaaaaaaaaaaaaa-tcagatttcggtgttaatttaaggggaaaacaaataaatgaa |
16046715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 16006097 - 16006157
Alignment:
| Q |
47 |
atagaattactaccttgaggacgaagagaaccttctccaccagcctatagagatatttttt |
107 |
Q |
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| T |
16006097 |
atagaattactaccttgaggacgaagtgatccttctccaccagcctatagagatttttttt |
16006157 |
T |
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