View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3804_low_53 (Length: 243)

Name: NF3804_low_53
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3804_low_53
NF3804_low_53
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-228)||(44141-44368)
[»] chr1 (9 HSPs)
chr1 (129-228)||(21087330-21087429)
chr1 (129-228)||(21095702-21095806)
chr1 (129-228)||(20770715-20770814)
chr1 (129-228)||(10624134-10624233)
chr1 (1-48)||(20770898-20770945)
chr1 (1-48)||(21087493-21087540)
chr1 (1-48)||(21095574-21095621)
chr1 (67-105)||(20770841-20770879)
chr1 (70-105)||(21095643-21095678)


Alignment Details
Target: scaffold0096 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44368 - 44141
Alignment:
Q  1 atcaataatgggccaatgagcccatctgaactaagagacccaactcaannnnnnnnnnnnnnnnnnaagaagttaggtccaagttacaacattaagcaag 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||                  ||||||||||||||||||||||||||||||||||    
T  44368 atcaataatgggccaatgagcccatctgaactaacagacccaactcaatttttattttttatttttaagaagttaggtccaagttacaacattaagcaag 44269  T
Q  101 tattcaagnnnnnnnnnnnnnnnnnnnncttctaatgttttacatagggaatagtaacatcatcaatacaatattatctgcaaggcattgtaattaaagc 200  Q
    ||||||||                    ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||   || ||||||||    
T  44268 tattcaagttttgtttgtgacattttttcttctaatgttttacatagggaatagtaacatcgtcaattcaatattatgtgcaaggctacgtcattaaagc 44169  T
Q  201 tacagggcctgtttttgtgactgctttt 228  Q
    ||| ||||||||||||||||||||||||    
T  44168 tacggggcctgtttttgtgactgctttt 44141  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 21087429 - 21087330
Alignment:
Q  129 cttctaatgttttacatagggaatagtaacatcatcaatacaatattatctgcaaggcattgtaattaaagctacagggcctgtttttgtgactgctttt 228  Q
    |||||||||||||||| | ||||||||||| |||||||| ||||||||| ||||||||  ||| |||||| |||||||  |||||||||| |||||||||    
T  21087429 cttctaatgttttacacaaggaatagtaacctcatcaattcaatattatgtgcaaggctatgtcattaaaactacaggaactgtttttgttactgctttt 21087330  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 228
Target Start/End: Original strand, 21095702 - 21095806
Alignment:
Q  129 cttctaatgttttacatagggaatagtaacatcatcaa-----tacaatattatctgcaaggcattgtaattaaagctacagggcctgtttttgtgactg 223  Q
    |||||||||||||||| ||||||||||||| |||||||     | ||||||||| ||||||||  ||| |||||| ||||||| ||||||||||| ||||    
T  21095702 cttctaatgttttacacagggaatagtaacctcatcaaatcaattcaatattatgtgcaaggctatgtcattaaaactacaggacctgtttttgttactg 21095801  T
Q  224 ctttt 228  Q
    |||||    
T  21095802 ctttt 21095806  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 20770814 - 20770715
Alignment:
Q  129 cttctaatgttttacatagggaatagtaacatcatcaatacaatattatctgcaaggcattgtaattaaagctacagggcctgtttttgtgactgctttt 228  Q
    |||||||||||||||| | |||||| |||| |||||||| ||||||||| ||||||||  ||| |||||| ||||  | ||||||||||| |||||||||    
T  20770814 cttctaatgttttacacaaggaatattaacctcatcaattcaatattatgtgcaaggctatgtcattaaaactacgagacctgtttttgttactgctttt 20770715  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 10624233 - 10624134
Alignment:
Q  129 cttctaatgttttacatagggaatagtaacatcatcaatacaatattatctgcaaggcattgtaattaaagctacagggcctgtttttgtgactgctttt 228  Q
    |||||||||||| | | ||||||| ||||| ||| |||| |||| |||| ||||||||  |||||||||| |||  || |||||||||||||||||||||    
T  10624233 cttctaatgtttaatacagggaattgtaacttcagcaattcaattttatgtgcaaggctctgtaattaaaactatgggacctgtttttgtgactgctttt 10624134  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20770945 - 20770898
Alignment:
Q  1 atcaataatgggccaatgagcccatctgaactaagagacccaactcaa 48  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||    
T  20770945 atcaataatgggccaatgagcccatctgaactaacaaacccaactcaa 20770898  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 21087540 - 21087493
Alignment:
Q  1 atcaataatgggccaatgagcccatctgaactaagagacccaactcaa 48  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||    
T  21087540 atcaataatgggccaatgaccccatctgaactaacaaacccaactcaa 21087493  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21095574 - 21095621
Alignment:
Q  1 atcaataatgggccaatgagcccatctgaactaagagacccaactcaa 48  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||||    
T  21095574 atcaataatgggtcaatgaacccatctgaactaacagacccaactcaa 21095621  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 20770879 - 20770841
Alignment:
Q  67 aagaagttaggtccaagttacaacattaagcaagtattc 105  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  20770879 aagaagttaggtctaagttacaacattaagcaagtattc 20770841  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 21095643 - 21095678
Alignment:
Q  70 aagttaggtccaagttacaacattaagcaagtattc 105  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21095643 aagtttggtccaagttacaacattaagcaagtattc 21095678  T

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