View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3804_low_54 (Length: 242)
Name: NF3804_low_54
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 24615850 - 24615638
Alignment:
| Q |
12 |
agagatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615850 |
agagatgatagtgaggattttgttgaacaaagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagag |
24615751 |
T |
|
| Q |
112 |
aggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615750 |
aggatatcattatttctattcacaacttattataactatatataaaaatagttcgactttattctactcttctggtgaatggttatgcagcatgtggtag |
24615651 |
T |
|
| Q |
212 |
tcactggccttat |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24615650 |
tcactggccttat |
24615638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 24114954 - 24115032
Alignment:
| Q |
41 |
aagtgattttgaactggtggattttatgttggattcaaaatatgtgatagataaatttcacagccaaagagaggatatc |
119 |
Q |
| |
|
|||||||||| | ||||| |||||| ||||||||||||||||||| |||||||||||| ||| |||| ||||||||| |
|
|
| T |
24114954 |
aagtgattttaagctggtcgatttttagttggattcaaaatatgtggtagataaatttctcagtcaaaaggaggatatc |
24115032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University