View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3804_low_70 (Length: 221)
Name: NF3804_low_70
Description: NF3804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3804_low_70 |
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| [»] scaffold1847 (1 HSPs) |
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Alignment Details
Target: scaffold1847 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1847
Description:
Target: scaffold1847; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 709 - 932
Alignment:
| Q |
4 |
ttatagacaagtttatttaaaggtgtaattggaagcgacaaaatcattccaacattatgcattctctttatataaagtataattaatatagaaatgtgtg |
103 |
Q |
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| T |
709 |
ttatagacaagtttatttaaaggtataattggaagcgacaaaatcattccaacattatgcattctctttatataaagtataattaatatagaaatgtgtg |
808 |
T |
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| Q |
104 |
tgt------agcagatatatttgttattttttatttagcatttcccttatattaaaattgaaacaaatgggcccttaaagcaaacaaactaataaaaatt |
197 |
Q |
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| T |
809 |
tgtgtatatagcagatatatttgttattttttctttagcattttccttatattaaaattgaaacaaatgggcccttaaagcaaacaaactaataaaaatt |
908 |
T |
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| Q |
198 |
gttattcattggcatttccttctc |
221 |
Q |
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| T |
909 |
gtgattcattggcatttccttctc |
932 |
T |
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