View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_1 (Length: 749)
Name: NF3805_high_1
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 667; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 15 - 749
Target Start/End: Complemental strand, 27321105 - 27320365
Alignment:
| Q |
15 |
tcactagagatataaaattagtgcatatgaattatatagcttatctctctcaaagcttagttagagcctgcaaattaagtttaatccatgaacttatata |
114 |
Q |
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| T |
27321105 |
tcactagagatataaaattagtgcatatgaattatatagcttatctctctcaaagcttagtttgagtctgcaaattaagtttaatccatgaacttatata |
27321006 |
T |
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| Q |
115 |
gttcgcaaattcatatttgtttaacttcaaagtatttcttcaaattgaggatacgaaaaaatactatcaatcaatgaaaatgaagacatttgnnnnnnnn |
214 |
Q |
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| T |
27321005 |
gttcgcaaattcatatttgtttaacttcaaagtatttcttcaaattgaggatacgaaaaaatactatcaatcaatgaaaatgaagacatttgtttttttt |
27320906 |
T |
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| Q |
215 |
n------ctgtgttctttctttatattattttcttatgcctaatccacttttgttattcttgtgaccagtttttatattggtgttgcaacatgaacaaaa |
308 |
Q |
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| T |
27320905 |
tttttctctgtgttctttctttatattattttcgtatgcctaatccacttttgttattcttgtgaccagtttttatattggtattgcaacatgaacaaaa |
27320806 |
T |
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| Q |
309 |
tttgtatatataattagtgcatttgaattaaagttatctctatcaaatcttagtttgagcctgcaaattgagttttgtccatgaacatatttggcaagtt |
408 |
Q |
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| T |
27320805 |
tttgtatatataattagtgcatttgaattaaagttatctctatcaaatcttagtttgagcttgcaaattgagttttgtccatgaacatatttggcaagtt |
27320706 |
T |
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| Q |
409 |
catgttagtttattcgaacctcactctgattcttaaagcagaaaaaattgtctgaaatcaatccgtgatatacgaagtattattcatgatatctcttata |
508 |
Q |
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| T |
27320705 |
catgttagtttattcgaacctcactctgattcttaaagcagaaaaaattgtctgaaatcaatccgtgatatacgaagtattattcatgatatctcttata |
27320606 |
T |
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| Q |
509 |
acttttaaaacggttattttatcaacagttataacatgtgattttggtccttacaattttaattgctcattaattaatggtctattcaattgcgaataaa |
608 |
Q |
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| T |
27320605 |
acttttaaaacggttattttatcaacagttataacatgtgattttggtccttacaattttaattgctcattgattaatggtctattcaattgcgaataaa |
27320506 |
T |
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| Q |
609 |
ctgtgctcatctagattgtgatttttcactgatcagagtaacacataacatggattgcaatgtagcaatacataattgtatcacttcctaaggacctaag |
708 |
Q |
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| T |
27320505 |
ctgtgctcatctagattgtgatttttcactgatcagagtaacacataacatggattgcaatgtagcaatacataattgtatcacttcctaaggacctaag |
27320406 |
T |
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| Q |
709 |
ctaatccatagttgtataagtcttgtcattggtgcttaatt |
749 |
Q |
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| T |
27320405 |
ctaatccatagttgtataagtcttgtcattggtgcttaatt |
27320365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 27321297 - 27321227
Alignment:
| Q |
135 |
ttaacttcaaagtatttcttcaaattgaggatacgaaaaaatactatcaatcaatgaaaatgaagacatttg |
206 |
Q |
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| T |
27321297 |
ttaacttcaaagtctttcttcaaattgacaataggaaaaa-tactatcaatcaatgaaaatgaagacatttg |
27321227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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