View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_10 (Length: 444)
Name: NF3805_high_10
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 227 - 432
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
| Q |
227 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
326 |
Q |
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| T |
5374850 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
5374751 |
T |
|
| Q |
327 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374750 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
5374651 |
T |
|
| Q |
427 |
gaccta |
432 |
Q |
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| |||| |
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| T |
5374650 |
ggccta |
5374645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 5375538 - 5375341
Alignment:
| Q |
30 |
tgtttgggaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataaaagccctctgggatagcttatttaatatagc |
129 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5375538 |
tgtttgagaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataa--gccctctgggatagcttatttaatatagc |
5375441 |
T |
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| Q |
130 |
cctctgggatatatttctttgtagcattccattagataaggtccataccttnnnnnnngaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
229 |
Q |
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| T |
5375440 |
cgtctgggatatatttctttgtagcattccattagataaggtccataccttaaaaaaagaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
5375341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
| Q |
226 |
aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag |
324 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
5393078 |
aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat |
5392979 |
T |
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| Q |
325 |
aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct |
388 |
Q |
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| T |
5392978 |
aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct |
5392916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 5370346 - 5370387
Alignment:
| Q |
139 |
tatatttctttgtagcattccattagataaggtccatacctt |
180 |
Q |
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| T |
5370346 |
tatatttctttgtagcattccattagataaggtccatacctt |
5370387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 5369652 - 5369747
Alignment:
| Q |
18 |
cacttgtgagactgtttgggaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataaaagccctctgggatagctt |
117 |
Q |
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|||||||||||||||| | |||||| ||||||||||| || |||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |
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| T |
5369652 |
cacttgtgagactgtt-gagaaagcttatggaaacacccaat--gacatctccatgagctgttttcagctttatttcataa---gcctctgggatagctt |
5369745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
| Q |
227 |
aaagattttgctttatcaatttcattttgactatctactc |
266 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
5354617 |
aaagattttgctttatcaatttcattttgacaatctactc |
5354656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
| Q |
355 |
aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa |
409 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||| |
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| T |
5354681 |
aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa |
5354735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 6496843 - 6496883
Alignment:
| Q |
11 |
acatcatcacttgtgagactgtttgggaaagcgtatggaaa |
51 |
Q |
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|||| |||||||||| |||||||||||||||| |||||||| |
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| T |
6496843 |
acataatcacttgtgtgactgtttgggaaagcttatggaaa |
6496883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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