View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_14 (Length: 385)
Name: NF3805_high_14
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 45792575 - 45792957
Alignment:
| Q |
1 |
acaatgattttagcattgtattagtttacttctttaaaatctacatactcatgaaaaaatattatgttagttatacttgtacacatgctacatgcactgt |
100 |
Q |
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| T |
45792575 |
acaatgattttagcattgtattagtttacttctttaaaatctatatactcatgaaaaaatatcatgttagttatacttgtacacatgctacatgcactgt |
45792674 |
T |
|
| Q |
101 |
gctatagttatactgttttgtgactcatagtaaactgtttattcctatgatttctggcagctatgagaattggtacatgcaagatgctaaactaaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792675 |
gctatagttatactgttttgtgactcatagtaaactgtttattcctatgatttctggcagctatgagaattggtacatgcaagatgctaaactaaaatca |
45792774 |
T |
|
| Q |
201 |
tccgagcaagttaaagaccaaatagtgatgaaaccattagaagt------------gaatcaagaagtcaaggaagtgaataaagagaccaaaacatcaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45792775 |
tccgagcaagttaaagaccaaatagtgatgaaaccattagaagttgaattaacttcgaatcaagaagtcaaggaggtgaataaagagaccaaaacatcaa |
45792874 |
T |
|
| Q |
289 |
attcatcacgtcagcaagacttggatgcatttcttctaggagatacagaaaacagcgatgatgacccaggtacaccttattca |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45792875 |
attcatcacgtcagcaagacttggatgcatttcttctaggagatacagaaaacagcgatgatgacccaggtacaccttattca |
45792957 |
T |
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