View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_15 (Length: 379)
Name: NF3805_high_15
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 42029192 - 42029484
Alignment:
| Q |
36 |
tggtttctcccttgttcgatagaagatcggggcttttataaattcatttttgtgttcgatacttctggctttctagcacca-----------cctcttaa |
124 |
Q |
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| T |
42029192 |
tggtttctcccttgttcgatagaagatcgtggcttttataaattcatttttgtgttcgatacttctggcttcctagcaccagaggtcgatgacctcttaa |
42029291 |
T |
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| Q |
125 |
aaagatttcaaagagtcattcatnnnnnnnnntatcatgtcccctaagtctataaatgttgtatttaagaattgattttgtcgtccgaaa---------- |
214 |
Q |
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| T |
42029292 |
aaagatttcaaagagtcatgcataaaaaaaaatatcatgtcccctgagtccataaatgttgtatttaagaattgattttgtcgtccgaaaaggattagcg |
42029391 |
T |
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| Q |
215 |
----------ttgtgcatttgcattccattcctctataattcattgtgaataaaataatgtgaatagtttcctggaaaaatatgttacctatg |
297 |
Q |
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| T |
42029392 |
gcacaatttgttgtgcgtttgcattccattcctctataattcattgtgaataaaataatgtgagtagtttcctggaaaaatatgttacctatg |
42029484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 42029473 - 42029524
Alignment:
| Q |
317 |
atgttacctatgttaaattgatagtatataccgttattttattgtgatgatg |
368 |
Q |
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| T |
42029473 |
atgttacctatgttaaattgatagtatataccgttattttattgtgatgatg |
42029524 |
T |
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