View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3805_high_19 (Length: 333)
Name: NF3805_high_19
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_19 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 16298667 - 16298349
Alignment:
| Q |
15 |
attattgctaaacaacagccatataataagtttaaatgattctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaagga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16298667 |
attattgctaaacaacagccatataataaatttaaatgattctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaagga |
16298568 |
T |
|
| Q |
115 |
tctgcaaatgcagctgatgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttt |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16298567 |
tctgcaaatgcagctgctgctggttgctcatcatcacagccacctggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttt |
16298468 |
T |
|
| Q |
215 |
tacggtttgaaaccatttaatttttgttcaatattgtataatactctgctttccttgcagcttttgattttttggcttggcataacaacttcttgtcata |
314 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16298467 |
tacggtttgaaacaatttaatttttgttcaatattgtctaatactcttcttttcttgcagcttttgattttttggcttggcataacaactttttgtcata |
16298368 |
T |
|
| Q |
315 |
ggtatattattaaccctct |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
16298367 |
ggtatattattaaccctct |
16298349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 16306130 - 16306060
Alignment:
| Q |
263 |
ctttccttgcagcttttgattttttggcttggcataacaacttcttgtcataggtatattattaaccctct |
333 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16306130 |
cttttcttgcagcttttgattttttggcttggcataacaactttttgtcataggtatattattaaccctct |
16306060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 22896163 - 22895845
Alignment:
| Q |
15 |
attattgctaaacaacagccatataataagtttaaatgattctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaagga |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22896163 |
attattgctaaacaacatccatataataaatttaaatgattctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaagga |
22896064 |
T |
|
| Q |
115 |
tctgcaaatgcagctgatgctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttt |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22896063 |
tctgcaaatgcagctgctgctggttgctcatcatcacaaccacctgactgtgtatgatgaatttggatgtaagtttacatatttttatgttaatcttttt |
22895964 |
T |
|
| Q |
215 |
tacggtttgaaaccatttaatttttgttcaatattgtataatactctgctttccttgcagcttttgattttttggcttggcataacaacttcttgtcata |
314 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22895963 |
tacagtttgaaacaatttaatttttgttcaatattgtctaatactcttcttttcttgcagcttttgattttttggcttggcataacaactttttgtcata |
22895864 |
T |
|
| Q |
315 |
ggtatattattaaccctct |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22895863 |
ggtatattattaaccctct |
22895845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 257
Target Start/End: Complemental strand, 15976875 - 15976679
Alignment:
| Q |
57 |
taaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaaggatctgcaaatgcagctgatgctggttgctcatcatcacagcca |
156 |
Q |
| |
|
||||| |||||||| || ||||| |||||||||| ||| ||||| ||| |||||||||| || ||| || ||| |||||| |||||||||||| || |
|
|
| T |
15976875 |
taaaattttgtataattcaatatttgtagagtttaaaagaatatttgtcggagaaggatatggaaacacatctg---ctggtttctcatcatcacaacct |
15976779 |
T |
|
| Q |
157 |
catggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaaccatttaatttttgttcaatattgtataat |
256 |
Q |
| |
|
| ||| | ||| ||| ||||||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||||||| | |||||||| || |||| |
|
|
| T |
15976778 |
cctggatatgtttgaaaaatttggatgtaagtttacatgtttttatgtccat-ttttcaacggtttgaaagaatttaatttattttcaatatggtctaat |
15976680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 14428922 - 14429140
Alignment:
| Q |
34 |
catataataagtttaaatgattctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaaggatctgcaaatgcagctgatg |
133 |
Q |
| |
|
|||||||||| ||| ||||||||| |||| | ||||||||||| | |||| |||||| || ||||| |||||||||| ||| || ||||| || ||| |
|
|
| T |
14428922 |
catataataaattttaatgattctgaaaaaatttatacttgaatttttgtatagtttcgaagaatatatgttggagaatgatatgaaaatggag---atg |
14429018 |
T |
|
| Q |
134 |
ctggttgctcatcatcacagccacatggctgtgtatgatgaatttggatgtaagtttacatatttttatgttcatcttttttacggtttgaaaccattta |
233 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||| |||| ||||| ||||||||||||||| |||||| |||||| ||||||| ||||||||| ||||| |
|
|
| T |
14429019 |
ctggttgttcatcatcacagccacctggctatgtttgataaatttagatgtaagtttacat-gttttattttcatc-tttttacagtttgaaacaattta |
14429116 |
T |
|
| Q |
234 |
atttttgttcaatattgtataata |
257 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
14429117 |
gtttttgttcaatattgtctaata |
14429140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 36236964 - 36237021
Alignment:
| Q |
54 |
ttctaaaaatttgtatacttgaatatgtgtagagtttcaaaaaatatctgttggagaa |
111 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||||||| |
|
|
| T |
36236964 |
ttctaaaaaattgtatacttgaatatttgtagagttttaaagaatatacgttggagaa |
36237021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University