View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_20 (Length: 324)
Name: NF3805_high_20
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 53018347 - 53018633
Alignment:
| Q |
17 |
cagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacattcaacaataggacaataggagaaagaatgtccaaaactacggcaac |
116 |
Q |
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| T |
53018347 |
cagtatcgacaacaatttgaagtaatatgaccctttttcatgcagttataacattcaacaataggacaataggagaaagaatgtccaaaattacggcaac |
53018446 |
T |
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| Q |
117 |
gatgacaatattcctccatcgtgaaaattgaccaaatcacgttgtcgtgttttgaggcacagaggaagaagtttgctgcaattcacgttaacaattgtga |
216 |
Q |
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| T |
53018447 |
gatgacaatattcctccatcgtgaaaattgaccaaatcacgttgttgtgttttgaggcacagaggaagaagtttgctgcaattcacgttaacaattgtga |
53018546 |
T |
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| Q |
217 |
ttgatgatgtcacaattggaaaggtaatgcaaaggggaaattgcacaaatgtggcaacgtaaatatgaaggacacgttggcaatatt |
303 |
Q |
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| T |
53018547 |
ttgatgatgtcacaattggaaaggtaatgcaaaggggaaattgcacaaatgtggcaacgtaaatatgaaggacacgttggcaatatt |
53018633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 16501861 - 16501775
Alignment:
| Q |
17 |
cagtatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacattcaacaataggacaataggagaaagaatgtcca |
103 |
Q |
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| T |
16501861 |
cagtatcgacaacaatttgaagcaatatgaccctttttcaagcaattataacattcaacggtcggacaattagagaaaaaatgtcca |
16501775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 24658245 - 24658192
Alignment:
| Q |
20 |
tatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacattcaa |
74 |
Q |
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| T |
24658245 |
tatcgacaacaatttgaagcaaaatgg-cctttttcatgcagttataacgttcaa |
24658192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 14824712 - 14824629
Alignment:
| Q |
20 |
tatcgacaacaatttgaagcaatatgatcctttttcatgcagttataacattcaacaataggacaat-aggagaaagaatgtcca |
103 |
Q |
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| T |
14824712 |
tatcgacaacagtttgatgcaatatgaccttttttcttgcagttatgacattctacattgggacaatcagga-aaagaatgtcca |
14824629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 3084177 - 3084217
Alignment:
| Q |
25 |
acaacaatttgaagcaatatgatcctttttcatgcagttat |
65 |
Q |
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| T |
3084177 |
acaacagtttgaagcaatatgaccctttctcatgcagttat |
3084217 |
T |
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