View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3805_high_21 (Length: 323)
Name: NF3805_high_21
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 25552881 - 25553176
Alignment:
| Q |
14 |
aacaatatcatcagttagctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggacataccacaaggtttccttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25552881 |
aacaatatcatcagttagctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggacataccacaaggtttccttca |
25552980 |
T |
|
| Q |
114 |
caaagcattttctccatcgaatccctgtctcttgctcggtcgcgtgttaatcgcgttgttttaatgggggaaataatctcattgactatgctcatgctat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25552981 |
caaagcattttctccatcgaatccctgtctcttactcggtcgcgtgttaatcgcgttgttttaatgggggaaataatctcattgactatgctcatgctat |
25553080 |
T |
|
| Q |
214 |
atgtgactgctgagagtggtttgtttatagtgtgtgatatataaagtggatcaagcaaagttctatggttacacacataaagcatattcttttgat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25553081 |
atgtgactgctgagagtggtttgtttatagtgtgtgatatataaagtggatcaagcaaagttctatggttacacacataaagcatattcttttgat |
25553176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 39975810 - 39975872
Alignment:
| Q |
32 |
ctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
94 |
Q |
| |
|
|||||||||||| | ||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
39975810 |
ctcagcaaacaatgaactaaaccttaacaaatatggttctctacatgttgttccttcaggaca |
39975872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 38792285 - 38792346
Alignment:
| Q |
33 |
tcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
94 |
Q |
| |
|
|||| |||||||| |||||||||| || ||||||||||||||||| || ||||||||||| |
|
|
| T |
38792285 |
tcagaaaacaaagagctaaaccttaataaataaggttctctacaagtggtcccttctggaca |
38792346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 16147570 - 16147650
Alignment:
| Q |
14 |
aacaatatcatcagttagctcagcaaacaaaggactaaaccttagcaagtaaggttctctacaagttgttccttctggaca |
94 |
Q |
| |
|
|||||| ||||||| || |||||||| | | ||||||||||| || |||||||| ||||||||||||||||| ||||| |
|
|
| T |
16147570 |
aacaatctcatcagcaagttcagcaaaaagtgaactaaaccttaataaataaggttccctacaagttgttccttcaggaca |
16147650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University