View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_23 (Length: 322)
Name: NF3805_high_23
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 134 - 273
Target Start/End: Original strand, 8447911 - 8448050
Alignment:
| Q |
134 |
tgttaggcaatgacgtcactacatggggggacaaccatgaagccatgcgcaatttgatttgcggtccttccttccttccttactcttttcttttatttat |
233 |
Q |
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| T |
8447911 |
tgttaggtaatgacgtcactacatggggggacaaccatgaagccatgcgcaatttgatttgcggtccttccttccttccttactcttttcttttatttat |
8448010 |
T |
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| Q |
234 |
tctttataattaatcccctcacacactcctaacagaaaat |
273 |
Q |
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| T |
8448011 |
tctttataattaatcccctcacacactcctaacagaaaat |
8448050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 8447788 - 8447865
Alignment:
| Q |
11 |
cataggtatgaatgaagtagatggaaatgtgtgccattttgtttattgaatccttgatgagagttagacatattctgc |
88 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447788 |
cataggtatgaatgaagtagatggaaatttgtgccattttgtttattgaatccttgatgagagttagacatattctgc |
8447865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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