View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_25 (Length: 310)
Name: NF3805_high_25
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 127 - 295
Target Start/End: Original strand, 9380463 - 9380631
Alignment:
| Q |
127 |
acccaaaaaccaactactaaaataagttttgatatattgcttctttaatgcagttgatgcatgcatgctagtataataagttacttaaagttgaaaacat |
226 |
Q |
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| T |
9380463 |
acccaaaaaccaacttctaaaattagttttgatatattgcttctttaatgcagttgatgcatgcatgctagtataataagttacttaaagttgaaaacat |
9380562 |
T |
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| Q |
227 |
catatgtttatccaaaaggaaaatataccaatagacaaaattgacttttgaaaacatcatgaagtatat |
295 |
Q |
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| T |
9380563 |
cagatgtttatccaaaaggaaaatataccaatagacaaaattgacttttgaaaacatcatgaagtatat |
9380631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 9380293 - 9380395
Alignment:
| Q |
11 |
caaagggagatgaatacttgagaataaaggaagccaagaaagcttcaacttatcattttcttttggcaaaactcaaataaaatgtgtttacaagagtgaa |
110 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380293 |
caaaaggagatgagtacttgagaataaaggaagccaagaaagcttcaacttatcattttcttttggcaaaactcaaataaaatgtgtttacaagagtgaa |
9380392 |
T |
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| Q |
111 |
aga |
113 |
Q |
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||| |
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| T |
9380393 |
aga |
9380395 |
T |
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