View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3805_high_27 (Length: 305)
Name: NF3805_high_27
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 8448373 - 8448117
Alignment:
| Q |
29 |
gaaattactacaattctgtgttgagtgaattaattggtaaagaaaaacatgcatgcatgaacctaggttaaggagattttgcagaagaacatatatatgt |
128 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448373 |
gaaattactacaattctgtgttgggtgaattaattggtaaagaaaaacatgcatgcatgaacctaggttaaggagattttgcagaagaacatatatatgt |
8448274 |
T |
|
| Q |
129 |
ctatggactttatagtataaaattatactacactagc--tagtagctagtgttataagctcacctgatgag-aaattttactagtttaaagaagaaaagt |
225 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8448273 |
tgatggactttatagtatataattatactacactagctatagtagctagtgttataagctcacctgatgagaaaattttactagtttaaagaagaaaagt |
8448174 |
T |
|
| Q |
226 |
acttcaatgaagagaagaagtagacaaaatgatcaaggagctaggtttgagttagga |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448173 |
acttcaatgaagagaagaagtagacaaaatgatcaaggagctaggtttgagttagga |
8448117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University