View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_high_31 (Length: 290)
Name: NF3805_high_31
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 22362581 - 22362844
Alignment:
| Q |
11 |
atcatcatcaatgaacacaattggaccatcttgtttcttggtgaaaattctctctatcattgctcttgattcctataagtgataattaataataatacac |
110 |
Q |
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| T |
22362581 |
atcatcatcaatgaacacaattggaccatcttgtttcttggtgaagattctctctatctttgttcttgattcctataagtggtaattaacaataatacac |
22362680 |
T |
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| Q |
111 |
aatttagatccacttgatatattgtaatattgctgcattaggcaatagcttacattaaatgcagtttcaagaattgtcggtccgaatccagcgagcacag |
210 |
Q |
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| T |
22362681 |
aatttagacccacttgatatattgtaatattgctacattaggcaatagcttacattaaatgcagtttcaagaattgtcggtccgaatccagcaagcacag |
22362780 |
T |
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| Q |
211 |
attgttgattatctcctccaccaatatagaaaggctacataaaattgaagaatgttagaaaaac |
274 |
Q |
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| T |
22362781 |
attgttgattatctcctccaccaatatagaaaggctacataaaattgaagaatgttagaaaaac |
22362844 |
T |
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