View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3805_high_9 (Length: 448)

Name: NF3805_high_9
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3805_high_9
NF3805_high_9
[»] chr4 (3 HSPs)
chr4 (152-437)||(8240302-8240590)
chr4 (191-437)||(15806633-15806878)
chr4 (21-106)||(8240646-8240731)
[»] chr2 (4 HSPs)
chr2 (187-437)||(1486443-1486693)
chr2 (187-280)||(5542249-5542342)
chr2 (187-257)||(14652984-14653054)
chr2 (187-263)||(42402518-42402594)
[»] chr7 (2 HSPs)
chr7 (187-437)||(23907683-23907933)
chr7 (218-287)||(16769242-16769311)
[»] chr1 (2 HSPs)
chr1 (186-281)||(23466122-23466217)
chr1 (187-275)||(20285622-20285710)
[»] chr3 (4 HSPs)
chr3 (187-287)||(49149050-49149150)
chr3 (187-437)||(34155959-34156209)
chr3 (187-275)||(11897921-11898009)
chr3 (187-263)||(15472747-15472823)
[»] chr6 (3 HSPs)
chr6 (358-419)||(31933213-31933274)
chr6 (187-431)||(28492418-28492662)
chr6 (187-431)||(29804828-29805072)
[»] chr8 (1 HSPs)
chr8 (187-275)||(23131871-23131959)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 152 - 437
Target Start/End: Complemental strand, 8240590 - 8240302
Alignment:
Q  152 tataacgagcatactgcattggacataaactaatcagagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaa-t 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |    
T  8240590 tataacgagcatactgcattggacataaactaatcagagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaaaaaaaaaaat 8240491  T
Q  251 tatgggtgaatcttcttttcaacaattattcaagtggtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatcc--ata 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  8240490 tatgggtgaatcttcttttcaacaattattcaagtggtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccatata 8240391  T
Q  349 attcgagacaaaaatgttctaaaaagtggttacacctggagagccggctcaggtaattcttcattttggtacactaattggagttctct 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8240390 attcgagacaaaaatgttctaaaaagtggttacacctggagagccggctcaggtaattcttcattttggtacactaattggagttctct 8240302  T

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Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 191 - 437
Target Start/End: Complemental strand, 15806878 - 15806633
Alignment:
Q  191 aagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtggtca 290  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||| | ||| ||||| |||||||||||||||| |||||||||||||||||| ||    
T  15806878 aagctaacatttgtctcctagggaagctagtttggaacatggtgcaaaagaaaaa-aaattgtgggtgaatcttctttccaacaattattcaagtggcca 15806780  T
Q  291 caatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacctggaga 390  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||| |||||||| ||||||    
T  15806779 caatttccttcacacagcagcagcccatcgtaatagctccccttcttagtcatccataattcgagcctaaaatgttttaaaaagcggttacacttggaga 15806680  T
Q  391 gccggctcaggtaattcttcattttggtacactaattggagttctct 437  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  15806679 gccggctcgggtaattcttctttttgatacactaattggagctctct 15806633  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 8240731 - 8240646
Alignment:
Q  21 ttctcactagaactcacttgttcttacaaagtaatctatcatctgaattcaaatttgttccacctcaatgtcactcacacacacgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8240731 ttctcactagaactcacttgttcttacaaagtaatctatcatctgaattcaaatttgttccacctcaatgtcactcacacacacgc 8240646  T

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Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 187 - 437
Target Start/End: Complemental strand, 1486693 - 1486443
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    ||||||||||||| ||||||||| ||||| ||  ||||||| ||||| ||||||||  | ||||||||||||||||||||||  |  |||||||| ||||    
T  1486693 agagaagctaacacttgtctcctagggaagcttttttggaacatggtacaaaaaactgacaaattatgggtgaatcttctttctagtaattattctagtg 1486594  T
Q  287 gtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacctg 386  Q
    | || |||||||||||||  ||| |||| ||||  || | |||||| || | ||| ||||| || | ||  |||| |||||||||||| |||||||| ||    
T  1486593 gccataatttccttcacacggcaacagcccatcacaacaactccccatcctagtcttccattatccaagcaaaaagtgttctaaaaagcggttacacatg 1486494  T
Q  387 gagagccggctcaggtaattcttcattttggtacactaattggagttctct 437  Q
    |||||| || |||||||||||||| |||||| |||| || |||||||||||    
T  1486493 gagagcaggttcaggtaattcttccttttggcacaccaactggagttctct 1486443  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 5542249 - 5542342
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattatt 280  Q
    |||||||| |||| ||| || ||||  || ||| ||||||| ||||||||||||||| ||||| | ||||||||||| |||| || ||||||||    
T  5542249 agagaagcaaacacttgccttcttgaaaagctaatttggaatatggtgcaaaaaacagataaactttgggtgaatctgctttccagcaattatt 5542342  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 14653054 - 14652984
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggt 257  Q
    |||||||| |||| |||||||||||| ||||| |||||| | ||||| |||  |||||| |||||||||||    
T  14653054 agagaagcaaacacttgtctccttggaaaacttgtttgggacatggttcaatcaacaaacaaattatgggt 14652984  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 42402594 - 42402518
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatct 263  Q
    ||||| |||||  ||||||| || ||||||||||||||| | ||||| |||   || ||||||||||||||||||||    
T  42402594 agagatgctaatgtttgtctgctagggaaactagtttgggacatggttcaatccacgaataaattatgggtgaatct 42402518  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 437
Target Start/End: Complemental strand, 23907933 - 23907683
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    |||||| |||||| ||||||||| ||||| || |||||||| ||||| ||||||||  | ||||||||||||||||||||||  |  |||||||| ||||    
T  23907933 agagaaactaacacttgtctcctagggaagcttgtttggaacatggtacaaaaaactgacaaattatgggtgaatcttctttctagtaattattccagtg 23907834  T
Q  287 gtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacctg 386  Q
    | || |||||||||||||  ||| || | ||||| || | |||||| || ||||| ||||| || | ||  ||||||||| ||||||| |||||||| ||    
T  23907833 gccataatttccttcacacggcaacaacccatcgcaacaactccccatcctggtcttccattatcctagcaaaaaatgttttaaaaagcggttacacatg 23907734  T
Q  387 gagagccggctcaggtaattcttcattttggtacactaattggagttctct 437  Q
    |||||| || ||| |||| ||||| |||||| |||| || |||||||||||    
T  23907733 gagagcaggttcatgtaactcttccttttggcacaccaactggagttctct 23907683  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 16769311 - 16769242
Alignment:
Q  218 tagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtgg 287  Q
    |||||||||| ||||||||||||||  ||||| | |||||||||||||||| || ||||||||| |||||    
T  16769311 tagtttggaatatggtgcaaaaaacggataaactttgggtgaatcttctttccagcaattattctagtgg 16769242  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 23466122 - 23466217
Alignment:
Q  186 cagagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattc 281  Q
    ||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||  ||||| | |||||||||||||||| || |||||||||    
T  23466122 cagagaagcgaacatctgtcttctagggaagctagtttggaatatggtgcaaaaaacggataaactttgggtgaatcttctttccagcaattattc 23466217  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 20285622 - 20285710
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaa 275  Q
    |||||||| |||| |||||||||||| ||||| || ||| | ||||| |||  |||||| ||||||||||| ||  |||||| ||||||    
T  20285622 agagaagccaacacttgtctccttggaaaacttgtatgggacatggttcaatcaacaaacaaattatgggtaaacattctttccaacaa 20285710  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 49149150 - 49149050
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    |||||||| |||||||| || || ||||| ||||||||||| ||||||||||||||  ||||| | |||||||||||||||| |  ||||||||| ||||    
T  49149150 agagaagcgaacatttgccttctagggaagctagtttggaatatggtgcaaaaaacggataaactttgggtgaatcttctttcctgcaattattctagtg 49149051  T
Q  287 g 287  Q
    |    
T  49149050 g 49149050  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 187 - 437
Target Start/End: Complemental strand, 34156209 - 34155959
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    |||||||||||||  || ||||| ||||| || |||||||| ||||||||||| || |||||| | |||||||||||||| |  | || |||||||||||    
T  34156209 agagaagctaacacatgcctcctagggaagcttgtttggaatatggtgcaaaatactaataaactgtgggtgaatcttctctctagcatttattcaagtg 34156110  T
Q  287 gt-cacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacct 385  Q
    || |||||||| |||  ||  |||||| |||| || || |  || ||  | ||||| || ||||| ||||  |||||||| ||||||| ||| || || |    
T  34156109 gtccacaattt-cttttcaatgcagcacctcaccgaaaaaattcaccaacctggtcctctataatccgagcaaaaaatgtcctaaaaaatggctatactt 34156011  T
Q  386 ggagagccggctcaggtaattcttcattttggtacactaattggagttctct 437  Q
    ||||||| ||||| |||||||| || |||||||| |  ||||||||| ||||    
T  34156010 ggagagcaggctcgggtaattcatccttttggtatagcaattggagtcctct 34155959  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 11897921 - 11898009
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaa 275  Q
    |||||||| |||| |||||||||||| ||||| || ||| | ||||| |||  |||||| ||||||||||| ||  |||||| ||||||    
T  11897921 agagaagccaacacttgtctccttggaaaacttgtatgggacatggttcaatcaacaaacaaattatgggtaaacattctttccaacaa 11898009  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 15472823 - 15472747
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatct 263  Q
    ||||| ||||| |||||||| ||||||||||| ||||||   ||||| |||   ||||||||||||||||| |||||    
T  15472823 agagatgctaatatttgtctgcttgggaaacttgtttgggccatggttcaatccacaaataaattatgggtaaatct 15472747  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 31933274 - 31933213
Alignment:
Q  358 aaaaatgttctaaaaagtggttacacctggagagccggctcaggtaattcttcattttggta 419  Q
    |||||||| ||||||| |||||| || |||||||| || |||||||||||||| ||||||||    
T  31933274 aaaaatgtcctaaaaaatggttatacatggagagcaggttcaggtaattcttctttttggta 31933213  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 431
Target Start/End: Original strand, 28492418 - 28492662
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    |||||||| |||| ||| || || ||||| || |||||||| ||||||||||||||| | |||   |||||||||||||||| || || |||||| | ||    
T  28492418 agagaagcgaacacttgccttctagggaagctggtttggaacatggtgcaaaaaacatacaaacattgggtgaatcttctttccagcatttattctaatg 28492517  T
Q  287 gtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacctg 386  Q
    ||   ||||||||   |   ||  ||||||| || |||||||| ||  || |||| || |||| ||| |  |||||||| |||||||  ||||| |  ||    
T  28492518 gttctaatttcctcttcgacgcttcagctcaccgcaatagctcgcccactaggtcctctataactcgtgctaaaaatgtcctaaaaaccggttatatttg 28492617  T
Q  387 gagagccggctcaggtaattcttcattttggtacactaattggag 431  Q
    |||||| || |||| ||||||||| ||||||||||  ||||||||    
T  28492618 gagagcaggttcagataattcttctttttggtacagcaattggag 28492662  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 431
Target Start/End: Original strand, 29804828 - 29805072
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaattattcaagtg 286  Q
    |||||||| |||| ||| || || ||||| || |||||||| ||||||||||||||| | |||   |||||||||||||||| || || |||||| | ||    
T  29804828 agagaagcgaacacttgccttctagggaagctggtttggaacatggtgcaaaaaacatacaaacattgggtgaatcttctttccagcatttattctaatg 29804927  T
Q  287 gtcacaatttccttcacatagcagcagctcatcgtaatagctccccttcttggtcatccataattcgagacaaaaatgttctaaaaagtggttacacctg 386  Q
    ||   ||||||||   |   ||  ||||||| || |||||||| ||  || |||| || |||| ||| |  |||||||| |||||||  ||||| |  ||    
T  29804928 gttctaatttcctcttcgacgcttcagctcaccgcaatagctcgcccactaggtcctctataactcgtgctaaaaatgtcctaaaaaccggttatatttg 29805027  T
Q  387 gagagccggctcaggtaattcttcattttggtacactaattggag 431  Q
    |||||| || |||| ||||||||| ||||||||||  ||||||||    
T  29805028 gagagcaggttcagataattcttctttttggtacagcaattggag 29805072  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 23131959 - 23131871
Alignment:
Q  187 agagaagctaacatttgtctccttgggaaactagtttggaaaatggtgcaaaaaacaaataaattatgggtgaatcttcttttcaacaa 275  Q
    |||||||| |||| |||||||||||| ||||| || ||| | ||||| |||  |||||| ||||||||||| ||  |||||| ||||||    
T  23131959 agagaagccaacacttgtctccttggaaaacttgtatgggacatggttcaatcaacaaacaaattatgggtaaacattctttccaacaa 23131871  T

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