View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_13 (Length: 414)
Name: NF3805_low_13
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 374
Target Start/End: Original strand, 26436733 - 26437095
Alignment:
| Q |
9 |
gaagaatatggtagaattaataatattagatttcaaaaatatttgtttggtataactgtgcaagtttatgttttatacttgaccacttttctccttttaa |
108 |
Q |
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| T |
26436733 |
gaagaaaatggtagaattaataatattagatttcaaaaatatttatttggtataactgtgcaagtttatgttttatacttgaccactattctccttttaa |
26436832 |
T |
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| Q |
109 |
acattgatggcctttgtagcatacacttttgcttgaaggtgaggttggtgtttggtggtattggcatgtgattgtgttcaattatgtcannnnnnnaaat |
208 |
Q |
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| T |
26436833 |
acattgatggcctttgtagcatacacttttgcttgaaggtgaggttggtgtttggt---attggcatgtgattgtgttcaattatgtcatttttttaaat |
26436929 |
T |
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| Q |
209 |
tacaatcgatgttgtgttgaagtgtgcgtgttgtgccggtgcttgtgttattgtttcatagttgaagagacatgtttagccctttaaagagatggaactg |
308 |
Q |
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| T |
26436930 |
tacaatcgatgttgtgtcgaagtgtgtgtgttgtgccggtgcttgtgttattgtttcatagttgaagagacatgtttagccctttaaagagatgaaactg |
26437029 |
T |
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| Q |
309 |
agctgctacctgaagcgtgcaaatgaatggacatattatgttgttaggtgttgcacaaactggttt |
374 |
Q |
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| T |
26437030 |
agttgctagctgaagcgtgcaaatgaatggacatattatgttgttaggtgttgcacaaactggttt |
26437095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 31633269 - 31633328
Alignment:
| Q |
26 |
taataatattagatttcaaaaatatttgtttggtataactgtgcaagtttatgttttata |
85 |
Q |
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| T |
31633269 |
taataatatgggatttcaaaagtatttgtttggtataactgggcaagtatatgttttata |
31633328 |
T |
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