View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_14 (Length: 387)
Name: NF3805_low_14
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Original strand, 8375852 - 8376211
Alignment:
| Q |
17 |
atattgtttgttatttgaatcgacaaacggtttgggtttaaataagggaacagagggtctaaggtaacgatggaacatgtgaggtactgcaagatgagat |
116 |
Q |
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| T |
8375852 |
atattgtttgttatttgaatccacaaaaggtttgggtttaaataagggaacagagggtctaaggtaacgatggaacatgtgaggtactgcaagatgagat |
8375951 |
T |
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| Q |
117 |
agctaagaaataattttaatttatgaatgagtgcaagaatacagagttttgaaggttattgaattatttccatgttctcttcagactttgtcttccaacc |
216 |
Q |
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| T |
8375952 |
agctaagaaataattttaatttatgaatgagtgcaagaatacagagttttgaaggttattgaattatttccatgttctcttcagactttgtcttccaacc |
8376051 |
T |
|
| Q |
217 |
cacatgccaacgtaagagccgtaaatgaatcaaaacccacaaccaccatttggtcctcttttttattttctcccccttaatttttgctcataccagatcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376052 |
cacatgccaacgtaagagccgtaaatgaatcaaaacccacaaccaccatttggtcctcttttttattttctcccccttaatttttgctcataccagatcc |
8376151 |
T |
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| Q |
317 |
caatgtcaacttagtttaataataattctaatttataattacactaaaatcctatcctat |
376 |
Q |
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| T |
8376152 |
caatgtcaacttagtttaataataattctaatttataattacactaaaatcctatcctat |
8376211 |
T |
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