View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_17 (Length: 355)
Name: NF3805_low_17
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 5262116 - 5262281
Alignment:
| Q |
22 |
ttggagtcagcaataatagaccaaaaactaatagttgtactgatatattctcctttcaatggatcctttcaatggatcgccaaccaaagctgaattaatt |
121 |
Q |
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| T |
5262116 |
ttggagtcagcaataatagacccaaaactaatagttgtactaatatattctcct-------------ttcaatgtatcaccaaccaaagctgaattaatt |
5262202 |
T |
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| Q |
122 |
tgaatgagttcagaaacaaagaatgagaagaaggaagtgtgggcacatacataaagagggacaagaagacaataggttg |
200 |
Q |
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| T |
5262203 |
tgaatgagttcagaaacaaagagtgagaagaaggaagtgtgggcacatacataaagagggacaagaagacaatgggttg |
5262281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 5262276 - 5262390
Alignment:
| Q |
234 |
gggttggatgggccagcataaaatttgttttaaaatcagagatattttttgtcatttacctgt-gnnnnnnnnnttccttttgaatgggatgagtcgtgg |
332 |
Q |
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| T |
5262276 |
gggttggatgggccagcataaaatttgttttaaaatcagagata-tttttgtcatttatctgtagaaaaaaaaattccttttgaatgggatgagtcgtgg |
5262374 |
T |
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| Q |
333 |
ccaacccgtgcctttg |
348 |
Q |
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| T |
5262375 |
tcaacccgtgcctttg |
5262390 |
T |
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