View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_19 (Length: 340)
Name: NF3805_low_19
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 1591684 - 1591373
Alignment:
| Q |
17 |
agctatatggataaataaatttattgattacaaataatttttgtcgtgttgaaaataaatacataaccttatatcatttgcatataaaatttgactaaat |
116 |
Q |
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| T |
1591684 |
agctatatggataaataaatttattgattacaaataatttttgtcgtgttgaaaataaatacataaccttatatcatttgcatataaaatttgactaaat |
1591585 |
T |
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| Q |
117 |
agaaaagtactaaaaaatgccttttaagggtgtcaattattcccaatgatgagtacctaacgcaaacgggaacagctacaaagggagccccacaatcttc |
216 |
Q |
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| T |
1591584 |
agaaaagtactaaaaaatgccttttaagggtgtcaattattcccaatgatgagtacctaacgcaaacgggaacagctacaaagggagccccacaatcttc |
1591485 |
T |
|
| Q |
217 |
acgtggacatctcgtgtgattgattcacaaattattgtagctaagctagatagataccannnnnnncctcctctaatannnnnnngttaaataaataata |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
1591484 |
acgtggacatctcgtgtgattgattcacaaattattgtagctaagctagatagataccatttttttcctcctctaatatttttttgttaaataaataata |
1591385 |
T |
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| Q |
317 |
ttagattcccta |
328 |
Q |
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|||||||||||| |
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| T |
1591384 |
ttagattcccta |
1591373 |
T |
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