View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_25 (Length: 313)
Name: NF3805_low_25
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 10041843 - 10041546
Alignment:
| Q |
1 |
aagcatatgctgcttgattagcttcacaaaacggatgagtcaatgcagtattcaaatgatagtaatttgattaatcattagaaatatttaatcctaaatt |
100 |
Q |
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| T |
10041843 |
aagcatatgctgcttgattagcttcacaaaacggatgagtcagtgtagtattcaaatgatagtaatttgattaatcattagaaatatttaatcctaaatt |
10041744 |
T |
|
| Q |
101 |
ttttaggtattatacatttgacaatagttgaaaaagatatataatgtcattgctattgaatatttttgcattcatccctatccaatagtgatttaaagag |
200 |
Q |
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| T |
10041743 |
ttttaagtattatacatgtgacaatagttgaaaaagatatataatgtcattgctattgaatatttttgcattcatccctatccaatagtgatttaaagag |
10041644 |
T |
|
| Q |
201 |
gaaagtgtaaagttgagaacgttctaatctcaacaccataggaaaaatcccatgaagtgtgagaaacagcctaattaaactacattggttgaaccaac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10041643 |
gaaagtgtaaagttgagaacgttctaatctcaacaccatagcaaaaatcccatgaagtgtgagaaacagcctaattaaactacattggttgaaccaac |
10041546 |
T |
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