View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3805_low_3 (Length: 707)
Name: NF3805_low_3
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 20028008 - 20027536
Alignment:
| Q |
14 |
catcatagaaacaaaagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcagagaagcttttttcatcaaatcttccatcaaacac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20028008 |
catcatagaaacaaaagaagaagaactcatggtttcaccatcaacgggtgaaaacctaacactcagagaagcttttttcatcaaatcttccatcaaacac |
20027909 |
T |
|
| Q |
114 |
tcaacaccaccaccacaaccaccccttttctcaattt------------ccacaaatttgccattacaagtaaagtacaatggatggagaatccc----- |
196 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
20027908 |
tcaacaccaccaccac------cccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaatacagccaa |
20027815 |
T |
|
| Q |
197 |
----acaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20027814 |
agttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatataccatgcaatcaaagcttctac |
20027715 |
T |
|
| Q |
293 |
ttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20027714 |
ttatgaaatcaaaagggatgatgatttgatgcttcaacttgctaatagatggtgttccaagaccaacacctttgtgttcccttggggagaatcaacaatc |
20027615 |
T |
|
| Q |
393 |
acattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaac |
471 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20027614 |
acattggaagatataaaggtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaac |
20027536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 471
Target Start/End: Original strand, 19962395 - 19962867
Alignment:
| Q |
14 |
catcatagaaacaaaagaagaagaactcatggtttcaccatcaacaggtgaaaacctaactctcagagaagcttttttcatcaaatcttccatcaaacac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
19962395 |
catcatagaaacaaaagaagaagaactcatggtttcaccatcaaccggtgaaaacctaactctcaaacaagcttttttcatcaaatcttccatcaaacat |
19962494 |
T |
|
| Q |
114 |
tcaacaccaccaccacaaccaccccttttctcaatttcc------------acaaatttgccattacaagtaaagtacaatggatggagaatccc----- |
196 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||| | |
|
|
| T |
19962495 |
tcaacaccaccaccac------cccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaatacagccaa |
19962588 |
T |
|
| Q |
197 |
----acaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962589 |
agttacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaatatacaatgcaatcaaagcttctac |
19962688 |
T |
|
| Q |
293 |
ttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaacacatttgtgttcccttggggagaatcaacaatc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
19962689 |
ttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaatacttttgttttcccttggggagaatcaacaatt |
19962788 |
T |
|
| Q |
393 |
acattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttccacccctcttttgaacagtgaac |
471 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19962789 |
acattggaagatataaaggtttgttttggttactctcttttgggtgattctatttctacccctcttttgaacagtgaac |
19962867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 151 - 471
Target Start/End: Original strand, 19967237 - 19967557
Alignment:
| Q |
151 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
250 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| ||||||| || ||| |||||||| || ||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
19967237 |
ccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgcaagatgaatggaagaaatgggtcaacaaattacgaccaaagtttgaattttt |
19967336 |
T |
|
| Q |
251 |
atggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
350 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
19967337 |
atggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaaggaatgatgctttgatccttcaacttgctgatagatggtgttcc |
19967436 |
T |
|
| Q |
351 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttcca |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19967437 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatataaaggtttgttttggttactctcttttgggtgattctatttcca |
19967536 |
T |
|
| Q |
451 |
cccctcttttgaacagtgaac |
471 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19967537 |
cccctcttttgaacagtgaac |
19967557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 151 - 471
Target Start/End: Complemental strand, 20021041 - 20020721
Alignment:
| Q |
151 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
250 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||| |||||| |||||| ||||||||| || ||||||| |||||| |||||||||||||| | | |
|
|
| T |
20021041 |
ccacaaatttgccattagaagttaagtattatgggtggagagctccacaagaagaatggaagaaatgggtcaacaaattaagaccaaagtttgaatttct |
20020942 |
T |
|
| Q |
251 |
atggatcaaaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
350 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20020941 |
atggatcaaaactggaatataccatgctatcacagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttcc |
20020842 |
T |
|
| Q |
351 |
aagaccaacacatttgtgttcccttggggagaatcaacaatcacattggaagatacaaaagtttgttttggttactctcttttgggtgattctatttcca |
450 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20020841 |
aagaccaatacttttgtgttcccttggggagaatcaacaatcacattggaagatataaaggtttgttttggttactctcttttgggtgattctatttcta |
20020742 |
T |
|
| Q |
451 |
cccctcttttgaacagtgaac |
471 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
20020741 |
aacctcttgagaacagtgaac |
20020721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 538 - 690
Target Start/End: Complemental strand, 20027469 - 20027317
Alignment:
| Q |
538 |
ttactcaaactgcgtggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctga |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20027469 |
ttactcaaactgcgtggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctga |
20027370 |
T |
|
| Q |
638 |
agattcttatgatactatttccacaactgttatccctattgcaatacttttag |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20027369 |
agattcttatgatactatttccacaactgttatccctattgcaatacttttag |
20027317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 538 - 690
Target Start/End: Original strand, 19962931 - 19963083
Alignment:
| Q |
538 |
ttactcaaactgcgtggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctga |
637 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19962931 |
ttactcaaagtgcatggatgaagcatttcatggagaatgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctga |
19963030 |
T |
|
| Q |
638 |
agattcttatgatactatttccacaactgttatccctattgcaatacttttag |
690 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19963031 |
agattctcatgatactatttccacaactgttatccctattgcaatacttttag |
19963083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 538 - 690
Target Start/End: Original strand, 19967624 - 19967776
Alignment:
| Q |
538 |
ttactcaaactgcgtggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctga |
637 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19967624 |
ttactcaaactgcgtggatgaagcatttcatggagagtgaaagtaaagtggaacatgaagcatttttggtttattggttatcaaggtttgtttttcctga |
19967723 |
T |
|
| Q |
638 |
agattcttatgatactatttccacaactgttatccctattgcaatacttttag |
690 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19967724 |
agattctcatgatactatttcgaaaactgttatccctattgcaatacttttag |
19967776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 259 - 382
Target Start/End: Complemental strand, 14856545 - 14856422
Alignment:
| Q |
259 |
aaactggaatatacaatgcaatcaaagcttctacttatgaaatcaaaagggatgatgatttgattcttcaacttgctaatagatggtgttccaagaccaa |
358 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14856545 |
aaactggaatatatcatgcaatcacagcttctacttatgaaatcaaaagggatgatgattttattcttgaacttgctaatagatggtgttccaagaccaa |
14856446 |
T |
|
| Q |
359 |
cacatttgtgttcccttggggaga |
382 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
14856445 |
tacttttgtgttcccttggggaga |
14856422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 552 - 690
Target Start/End: Complemental strand, 20020643 - 20020505
Alignment:
| Q |
552 |
tggatgaagcatttcatggagagtgaaagtaaattggagcatgaagcttttttggtttattggttacaaaggtttgtttttcctgaagattcttatgata |
651 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
20020643 |
tggatgatgcatttcatggagactgaaagcaaagtggagcatgaagcatttttggtttattggttatcaaggtttgtatttccttcagattcttatgata |
20020544 |
T |
|
| Q |
652 |
ctatttccacaactgttatccctattgcaatacttttag |
690 |
Q |
| |
|
| ||||||| | ||||| | ||||||||||||| ||||| |
|
|
| T |
20020543 |
ccatttccaaagctgtttttcctattgcaatacgtttag |
20020505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 151 - 267
Target Start/End: Complemental strand, 14856985 - 14856869
Alignment:
| Q |
151 |
ccacaaatttgccattacaagtaaagtacaatggatggagaatcccacaaccagaatggaacaactgggtcacaaaattacaaccaaagtttgaatcttt |
250 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||| || ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
14856985 |
ccacaaatttgccattagaagtgaagtacaatgggtggagaactccacaagaagaatggaagaaatgggtcaaaaaattacaaccaaagtttgaattttt |
14856886 |
T |
|
| Q |
251 |
atggatcaaaactggaa |
267 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14856885 |
atggatcaaaattggaa |
14856869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University