View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_30 (Length: 302)
Name: NF3805_low_30
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 36952511 - 36952236
Alignment:
| Q |
7 |
aaagaatctctttcagcttagtcagaaattagttcgaatcaaaacatgagaatgtggcaatgttaaattcttttgagggagagtttcgtaccttcctacc |
106 |
Q |
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| T |
36952511 |
aaagaatctctttcagcttagtcagaaattagttcgaatcaaaacatgagaatgtggcaatgttaaattcttttgagggagagtttcgtaccttcctacc |
36952412 |
T |
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| Q |
107 |
tgactcaagagattaatatttgcattgcatgcggagaatactctcggttcacaaaagaaaggaaaaaaccatgtccacttacaaaacaaaagttcatcat |
206 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952411 |
tgactcaagacattaatattacagttgcatgcggagaatactctcggttcacaaaagaaaggaaaaaaccatgtccacttacaaaacaaaagttcatcat |
36952312 |
T |
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| Q |
207 |
cttctattagccgttggaaagcctcaaaatcagaaacaactcattttagtgctatgccaaacaacaagaagcttga |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952311 |
cttctattagccgttggaaagcctcaaaatcagaaacaactcattttagtgctatgccaaacaacaagaagcttga |
36952236 |
T |
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