View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3805_low_31 (Length: 291)

Name: NF3805_low_31
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3805_low_31
NF3805_low_31
[»] chr6 (3 HSPs)
chr6 (75-270)||(26857756-26857946)
chr6 (11-217)||(25050846-25051057)
chr6 (80-206)||(30488430-30488558)
[»] chr5 (4 HSPs)
chr5 (11-210)||(4897338-4897538)
chr5 (80-176)||(6742457-6742554)
chr5 (80-162)||(33689905-33689988)
chr5 (95-210)||(21637257-21637375)
[»] chr1 (3 HSPs)
chr1 (11-217)||(1284814-1285022)
chr1 (90-167)||(33072773-33072850)
chr1 (11-167)||(35891409-35891565)
[»] scaffold0245 (2 HSPs)
scaffold0245 (11-167)||(11132-11289)
scaffold0245 (11-217)||(9459-9667)
[»] chr4 (6 HSPs)
chr4 (11-210)||(10032594-10032795)
chr4 (11-210)||(18812577-18812780)
chr4 (80-215)||(42664918-42665055)
chr4 (11-83)||(8678650-8678722)
chr4 (11-53)||(25843568-25843610)
chr4 (128-210)||(8818777-8818859)
[»] scaffold0229 (1 HSPs)
scaffold0229 (11-217)||(9787-9995)
[»] chr3 (6 HSPs)
chr3 (35-208)||(548088-548262)
chr3 (80-207)||(25836364-25836493)
chr3 (11-84)||(34143068-34143141)
chr3 (96-208)||(26667113-26667227)
chr3 (11-166)||(43819848-43820007)
chr3 (96-167)||(9032830-9032902)
[»] chr2 (3 HSPs)
chr2 (93-204)||(14007624-14007741)
chr2 (128-210)||(20957431-20957514)
chr2 (11-48)||(23748619-23748656)
[»] scaffold0160 (1 HSPs)
scaffold0160 (131-216)||(28397-28483)
[»] chr7 (1 HSPs)
chr7 (95-210)||(29598097-29598214)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 270
Target Start/End: Complemental strand, 26857946 - 26857756
Alignment:
Q  75 gaatgaaaaa-ataacaagatagtacaatagtgagagatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaat 173  Q
    |||||||||| |||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  26857946 gaatgaaaaagataacaagatagtagaaaggtgagagatatttacaaggtaagttagtctaactaactcttaactacctaaccaaccaattaactctaat 26857847  T
Q  174 ttaccatcatctaactatggcttattcactatactctgataaatttcgtagaatcgcaaatcaagtttcaaaatatcaggatatgagcagtacctat 270  Q
    ||||||||||||||||||||||||||||||||||      ||| | |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  26857846 ttaccatcatctaactatggcttattcactatac------aaactccgtagaatcgcacatcaagtttcaaaagatcaggatatgagcagtacctat 26857756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 25051057 - 25050846
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||||||||| ||||||||| | ||||||| ||||| | | ||||||||||||| |    
T  25051057 cataggagaagtaggcattagaggtagaaacaaaggaataatctttgtaattcatattgaattaaattgaaaaagataaccatagagtacaatagtgaaa 25050958  T
Q  110 gatatttataaggtaagctagt---ctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactat 205  Q
     |||||||||  || || ||||   ||||||||||||| |||||||||||||  |||||||  || |||||  || |||||||||||| |||||||||||    
T  25050957 tatatttatagagtgagttagtctcctaactaactcttaactacctaaccaagtaactaaccatagtttacatattatctaactatggtttattcactat 25050858  T
Q  206 actctgataaat 217  Q
    ||||| ||||||    
T  25050857 actctaataaat 25050846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 30488558 - 30488430
Alignment:
Q  80 aaaaaataacaagatagtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac- 177  Q
    |||| ||||| ||| | |||||| ||||||| |||||||| || | || |||||||||||||| || |||| ||||||||||||| |||  ||||||||     
T  30488558 aaaagataactagagattacaatggtgagagctatttataggggtgagttagtctaactaacttttaactatctaaccaaccaacaaaccataatttaca 30488459  T
Q  178 catcatctaactatggcttattcactata 206  Q
     || | |||||||||| ||||||||||||    
T  30488458 tattaactaactatggtttattcactata 30488430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 4897338 - 4897538
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaaa-taacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||| ||| ||||||||| |||||    
T  4897338 cataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagctaactagagagtacaatattgaga 4897437  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaatttaccatcatctaactatggcttattcactatactc 209  Q
    | |||||||| ||| || ||||||||||||||||| ||||||||| ||||||||||||  || |||||||| |||||||||||| |||||||||||||||    
T  4897438 gttatttatagggtgagttagtctaactaactcttaactacctaatcaaccaactaaccatagtttaccattatctaactatggtttattcactatactc 4897537  T
Q  210 t 210  Q
    |    
T  4897538 t 4897538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 6742554 - 6742457
Alignment:
Q  80 aaaaaataacaagatagtacaatagtgagagatatttata-aggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaattta 176  Q
    |||||||| ||| |||||||||||||||||| |||||||| | ||||  |||| |||||||||||| | ||||||||||||||||||||  |||||||    
T  6742554 aaaaaatatcaaaatagtacaatagtgagagttatttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataattta 6742457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 33689988 - 33689905
Alignment:
Q  80 aaaaaataacaagatagtacaatagtgagagatatttataa-ggtaagctagtctaactaactcttcactacctaaccaaccaa 162  Q
    |||| ||||||| |||||||||||||||||| ||||||||| || ||| |||||||| | |||||| |||||||||| ||||||    
T  33689988 aaaagataacaaaatagtacaatagtgagagctatttataagggcaagttagtctaattgactcttaactacctaactaaccaa 33689905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 21637257 - 21637375
Alignment:
Q  95 agtacaatagt-gagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaatt-taccatcatctaactat 191  Q
    ||||||||||| || || ||||||||||| | || |||| |||||||||| | ||||||||||||||||||||||| || || |   || | ||||||||    
T  21637257 agtacaatagtcgaaagttatttataagggtgagttagtgtaactaactcctaactacctaaccaaccaactaactatagttctcatataaactaactat 21637356  T
Q  192 ggcttattcactatactct 210  Q
    || ||||||||||||||||    
T  21637357 ggtttattcactatactct 21637375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 1285022 - 1284814
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| |    
T  1285022 cataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtgata 1284923  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactatact 208  Q
    | |||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||  || |||||   ||| |||||||||| ||||||  ||||||    
T  1284922 gttatttatagggtgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattctatatact 1284823  T
Q  209 ctgataaat 217  Q
    || ||||||    
T  1284822 ctaataaat 1284814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 33072850 - 33072773
Alignment:
Q  90 aagatagtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaac 167  Q
    |||| |||||||||||||||| ||||||||||| | ||  || ||||||||||||| ||||||||||||||||||||||    
T  33072850 aagagagtacaatagtgagagttatttataagggtgagtcag-ctaactaactcttaactacctaaccaaccaactaac 33072773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 35891409 - 35891565
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaa-aataacaagatagtacaatagtgaga 109  Q
    |||||||||||||| | ||| |||| || |||||||||||||| |||| ||| | |||||||||| |||||||  | ||||||| |||| ||  ||||||    
T  35891409 cataggagaagtagacatgagaggttgatacaaaggaataatccttgtcatttatattgaattaggatgaaaaggacaacaagagagtaaaaaggtgaga 35891508  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaac 167  Q
    | || | ||| ||| || |||||||| ||||  || ||||||||||||||||| ||||    
T  35891509 gtta-tcatagggtgagttagtctaattaacatttaactacctaaccaaccaattaac 35891565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 11289 - 11132
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| |    
T  11289 cataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtgata 11190  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaac 167  Q
    | |||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||    
T  11189 gttatttatagggtgagttagtctaactaactcttaactacctaaccaaccaactaac 11132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 9667 - 9459
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | ||||||||||| |||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| |    
T  9667 cataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtgata 9568  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactatact 208  Q
    | |||||||| ||| || ||||||||||||| ||| ||||||||||||||||||||||  || |||||   ||| |||||||||| ||||||  ||||||    
T  9567 gttatttatagggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattctatatact 9468  T
Q  209 ctgataaat 217  Q
    || ||||||    
T  9467 ctaataaat 9459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 10032594 - 10032795
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | ||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  10032594 cataggagaagtaggcattagaggtagaaacaaaggaatagtccttgtaattcatattgaattagaatgaaaaagataactagagagtacaatagtgaga 10032693  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactatact 208  Q
    | |||||||| ||| || |||||||||  |||||| ||||||||||||||||||||||  || |||||   ||| |||||||||| |||||| |||||||    
T  10032694 gttatttatagggtgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattctctatact 10032793  T
Q  209 ct 210  Q
    ||    
T  10032794 ct 10032795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 18812577 - 18812780
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| ||| ||||||||||||| |||||||| |||||||||| ||||||||||| ||||||| ||||| | | |||||||||||||||    
T  18812577 cataggagaagtaggcatgagaggtagaaacaaaagaataatccttgtaattcatattgaattagattgaaaaagataaccatagagtacaatagtgaga 18812676  T
Q  110 gatatttataaggtaagctagt--ctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactata 206  Q
    ||||||||||  || || ||||   |||||||||||| |||||||||| ||  |||||||  || |||||  || |||||| ||||| ||||||||||||    
T  18812677 gatatttatagagtgagttagttcgtaactaactcttaactacctaactaagtaactaaccatagtttacatattatctaattatggtttattcactata 18812776  T
Q  207 ctct 210  Q
    ||||    
T  18812777 ctct 18812780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 42665055 - 42664918
Alignment:
Q  80 aaaaaataacaagatagtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac- 177  Q
    |||| |||||||||||||||||| ||||||  ||||||||||| | || ||||||||||||||||| ||||||||| ||||||||||||  || |||||     
T  42665055 aaaagataacaagatagtacaattgtgagaactatttataagggtgagttagtctaactaactcttaactacctaaacaaccaactaaccgtagtttaca 42664956  T
Q  178 catcatctaactatggcttattcactatactctgataa 215  Q
     || | |||||||||| ||||||| |||||||| ||||    
T  42664955 tattaactaactatggtttattcattatactctaataa 42664918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 8678722 - 8678650
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaa 83  Q
    ||||||||||||||||||||||||||||||  ||| ||||||| |||||||||| ||| ||||| ||||||||    
T  8678722 cataggagaagtaggcttgataggtagaaaataagaaataatccttgtaattcatattcaattaaaatgaaaa 8678650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 25843610 - 25843568
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatc 53  Q
    ||||||||| ||| |||||||||||||||||||||||||||||    
T  25843610 cataggagaggtaagcttgataggtagaaacaaaggaataatc 25843568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 8818777 - 8818859
Alignment:
Q  128 tagtctaactaactcttcactacctaaccaaccaactaactctaatttaccatcatctaactatggcttattcactatactct 210  Q
    |||||||||||| | || ||||| |||||||| ||| ||||||| ||||| || | ||||| |||  ||||||||||||||||    
T  8818777 tagtctaactaatttttaactacttaaccaacaaacaaactctagtttactattaactaaccatgatttattcactatactct 8818859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 9995 - 9787
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgaga 109  Q
    |||||||||||||||| | | ||||||||||| |||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| |    
T  9995 cataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaattagattgaaaaagataactagagagtacaatagtgata 9896  T
Q  110 gatatttataaggtaagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatggcttattcactatact 208  Q
    | |||||||| ||| || ||||||||||||| ||| ||||||||||||||||||||||  || |||||   ||| |||||||||| ||||||  ||||||    
T  9895 gttatttatagggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggtttattctatatact 9796  T
Q  209 ctgataaat 217  Q
    || ||||||    
T  9795 ctaataaat 9787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 548262 - 548088
Alignment:
Q  35 tagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa-ataacaagatagtacaatagtgagagatatttataaggtaagctagtct 133  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||  ||| ||||||||| | | || ||||||||  || || ||||||    
T  548262 tagaaacaaaggaataatccttgtaattcatattgaattagaatgaaaaagataattagagagtacaatatttaaagttatttatagtgtgagttagtct 548163  T
Q  134 aactaactcttcactacctaaccaaccaactaactctaatttaccatcatctaactatggcttattcactatact 208  Q
    ||||||||||| |||||||||||||||||||||   || |||||||| |||||| ||||  ||||||||||||||    
T  548162 aactaactcttaactacctaaccaaccaactaatcatagtttaccattatctaaatatgatttattcactatact 548088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 207
Target Start/End: Complemental strand, 25836493 - 25836364
Alignment:
Q  80 aaaaaataacaagatagtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaattta-c 177  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||| | | |||||||||||||||| | |||||||||| ||||||||| |  || |||| |    
T  25836493 aaaagataacaagagagtacaatggtgagagttatttataaggatgaactagtctaactaactcctaactacctaactaaccaactagccatagtttatc 25836394  T
Q  178 catcatctaactatggcttattcactatac 207  Q
     |||| |||||||||| |||||||||||||    
T  25836393 tatcaactaactatggtttattcactatac 25836364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 34143141 - 34143068
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaattagaatgaaaaa 84  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  34143141 cataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaa 34143068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 26667113 - 26667227
Alignment:
Q  96 gtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatctaactatgg 193  Q
    ||||||| ||||||| |||||||| || | || ||||||||||||||||| |||||||||| |||||||||||  ||||||||  || | ||||||||||    
T  26667113 gtacaatggtgagagttatttataggggtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactatgg 26667212  T
Q  194 cttattcactatact 208  Q
     | ||||||||||||    
T  26667213 ttaattcactatact 26667227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 43819848 - 43820007
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaataatcattgtaattcaaattgaa--ttagaatgaaaaa-ataacaagatagtacaatagtga 107  Q
    |||| |||||||| | |||||| || || ||||| |||||||| || ||||||| ||||||  ||||||||||||| ||||  ||| ||||||  | |||    
T  43819848 cataagagaagtatgattgataagttgatacaaaagaataatccttataattcatattgaaaattagaatgaaaaagataattagagagtacagcaatga 43819947  T
Q  108 gagatatttataag-gtaagctagtctaactaactcttcactacctaaccaaccaactaa 166  Q
    | | |||||||| | || || |||||| ||||||| || |||||||||||||||||||||    
T  43819948 gggttatttataggagtgagttagtcttactaacttttaactacctaaccaaccaactaa 43820007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 9032830 - 9032902
Alignment:
Q  96 gtacaatagtgagagatatttataaggtaa-gctagtctaactaactcttcactacctaaccaaccaactaac 167  Q
    ||||||| |||| || ||||||||||| || | ||||||||||||||||| |||||  ||||||||| |||||    
T  9032830 gtacaatggtgaaagctatttataagggaaagttagtctaactaactcttaactactcaaccaaccagctaac 9032902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 14007741 - 14007624
Alignment:
Q  93 atagtacaatagtgagagatatttataagg-----taagctagtctaactaactcttcactacctaaccaaccaactaactctaatttac-catcatcta 186  Q
    |||||||||| ||||||| |||||||| ||     |||| ||||||||||||||||| ||||||||||||||||||||||  || |||||  || | |||    
T  14007741 atagtacaatggtgagagttatttatatgggtgagtaagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatattaacta 14007642  T
Q  187 actatggcttattcacta 204  Q
    ||||||| ||||||||||    
T  14007641 actatggtttattcacta 14007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 20957514 - 20957431
Alignment:
Q  128 tagtctaactaactcttcactacctaaccaaccaactaactctaatttacc-atcatctaactatggcttattcactatactct 210  Q
    |||||||||||||||   |||||||||| ||| |||||||  ||||||||  || | |||||||||| ||||||||||||||||    
T  20957514 tagtctaactaactcacaactacctaactaactaactaaccataatttacatataacctaactatggtttattcactatactct 20957431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 23748656 - 23748619
Alignment:
Q  11 cataggagaagtaggcttgataggtagaaacaaaggaa 48  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  23748656 cataggagaagtaggcttgataggttgaaacataggaa 23748619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 28483 - 28397
Alignment:
Q  131 tctaactaactcttcactacctaaccaaccaactaactctaatttacc-atcatctaactatggcttattcactatactctgataaa 216  Q
    |||||||||||||| |||   ||||||||||||||||  || |||||| |||| |||||||||| ||||||| |||||||| |||||    
T  28483 tctaactaactcttaactgtataaccaaccaactaaccatagtttacctatcaactaactatggtttattcaatatactctaataaa 28397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 29598097 - 29598214
Alignment:
Q  95 agtacaatagtgagagatatttataagg-taagctagtctaactaactcttcactacctaaccaaccaactaactctaatttacc-atcatctaactatg 192  Q
    |||| ||| ||||||| |||||||| || | || ||||||||||||||| | || |||||||| || |||||||  || |||||  || | |||||||||    
T  29598097 agtataatggtgagagttatttataggggtgagttagtctaactaactcctaaccacctaacctacaaactaaccatagtttacatattaactaactatg 29598196  T
Q  193 gcttattcactatactct 210  Q
    | ||||||||||||||||    
T  29598197 gtttattcactatactct 29598214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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