View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3805_low_33 (Length: 272)

Name: NF3805_low_33
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3805_low_33
NF3805_low_33
[»] chr4 (4 HSPs)
chr4 (57-261)||(8239936-8240140)
chr4 (69-261)||(15806282-15806474)
chr4 (1-62)||(8240187-8240248)
chr4 (3-63)||(15806517-15806577)
[»] chr2 (4 HSPs)
chr2 (57-265)||(1486073-1486281)
chr2 (119-255)||(7817155-7817291)
chr2 (169-207)||(3777860-3777898)
chr2 (169-207)||(19266713-19266751)
[»] chr7 (1 HSPs)
chr7 (57-242)||(23907339-23907524)
[»] chr1 (1 HSPs)
chr1 (170-245)||(50235340-50235415)
[»] chr6 (4 HSPs)
chr6 (169-264)||(34602890-34602985)
chr6 (169-264)||(34724167-34724262)
chr6 (173-264)||(35234781-35234872)
chr6 (170-240)||(21403873-21403943)
[»] chr3 (2 HSPs)
chr3 (170-240)||(3084282-3084352)
chr3 (171-264)||(37151207-37151300)
[»] chr5 (1 HSPs)
chr5 (170-240)||(7818437-7818507)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 57 - 261
Target Start/End: Complemental strand, 8240140 - 8239936
Alignment:
Q  57 cttccatagatgatgcttatatttggcctcacaatagcaaccgtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaa 156  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8240140 cttccataggtgatgcttatatttggcctcacaatagcaacggtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaa 8240041  T
Q  157 ctataataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccacttta 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8240040 ctataataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccacttta 8239941  T
Q  257 tctct 261  Q
    |||||    
T  8239940 tctct 8239936  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 15806474 - 15806282
Alignment:
Q  69 atgcttatatttggcctcacaatagcaaccgtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaactataataatag 168  Q
    |||||||||||||| ||||||||||||||  |||||||||| |||||| |  ||||| ||||||| |||| |||||| ||  |||||||||||||  |||    
T  15806474 atgcttatatttggtctcacaatagcaacgttgtttacactacaaagaacaaatacaattggattttatctcaaacataacttgtaaactataatgctag 15806375  T
Q  169 ttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctct 261  Q
    || ||||||||| ||||||||| |||||||||| ||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||    
T  15806374 tttttggtcttgaatttggagaatgaaaattccggaaaaatacaagttcattctttggctttcttatcacaacgctgttcccactttatctct 15806282  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8240248 - 8240187
Alignment:
Q  1 ctgtaaaagatgtttgcaccaccggcgggcagcacactcaatcgctatacaccatccttcca 62  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8240248 ctgtaaaagatgttttcaccaccggcgggcagcacactcaatcgctatacaccatccttcca 8240187  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 15806577 - 15806517
Alignment:
Q  3 gtaaaagatgtttgcaccaccggcgggcagcacactcaatcgctatacaccatccttccat 63  Q
    ||||||||||||| ||| | |||||||||||||||||||| ||||||||| || |||||||    
T  15806577 gtaaaagatgttttcactatcggcgggcagcacactcaattgctatacactattcttccat 15806517  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 1486281 - 1486073
Alignment:
Q  57 cttccatagatgatgcttatatttggcctcacaatagcaaccgtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaa 156  Q
    ||||||||||||||||||||||||||||||| |||| ||   |||||||| || | || || ||||||| ||||||| ||||||||||||||| ||  ||    
T  1486281 cttccatagatgatgcttatatttggcctcataataacagtggtgtttactctacgaatagtggatacaattggattttatcacaaacagaaaatgagaa 1486182  T
Q  157 ctataataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccacttta 256  Q
    |||||| || |   ||| | |||||||||||||||| ||| |||| ||||||| ||| |||||| | ||||||||||||||||||| ||| || |||||     
T  1486181 ctataacaacacaacttcggcttggatttggagattaaaagttccggaaaaattcaatttttttgtctggcttgcttgtcacaacgttgtccctactttg 1486082  T
Q  257 tctctgctc 265  Q
    ||| |||||    
T  1486081 tctttgctc 1486073  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 7817155 - 7817291
Alignment:
Q  119 ggatacagttggattctatcacaaacagaaactgtaaactataataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagtttt 218  Q
    ||||||| ||||||  ||||||||||||||| ||  ||||||||  | |   ||||| |||||||||||||||| ||| |||| ||||||| ||||||||    
T  7817155 ggatacaattggatgttatcacaaacagaaaatgagaactataacgacacaacttgggcttggatttggagattaaaagttccggaaaaattcaagtttt 7817254  T
Q  219 ttctttggcttgcttgtcacaacgctgttcccacttt 255  Q
    || | ||||||||||||||||||||||| || |||||    
T  7817255 ttgtctggcttgcttgtcacaacgctgtccctacttt 7817291  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 3777898 - 3777860
Alignment:
Q  169 ttcttggtcttggatttggagattgaaaattccagaaaa 207  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  3777898 ttcttggtcttggatatggagattaaaaattccagaaaa 3777860  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 19266713 - 19266751
Alignment:
Q  169 ttcttggtcttggatttggagattgaaaattccagaaaa 207  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  19266713 ttcttggtcttggatatggagattaaaaattccagaaaa 19266751  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 242
Target Start/End: Complemental strand, 23907524 - 23907339
Alignment:
Q  57 cttccatagatgatgcttatatttggcctcacaatagcaaccgtgtttacactgcaaagagcggatacagttggattctatcacaaacagaaactgtaaa 156  Q
    |||||||| |||||||||||||||||||||| |||| ||   |||||||| || | ||||| ||||||| ||||||  ||||||||||||||| ||  ||    
T  23907524 cttccatatatgatgcttatatttggcctcataataacagtggtgtttactctacgaagagtggatacaattggatgttatcacaaacagaaaatgagaa 23907425  T
Q  157 ctataataatagttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacg 242  Q
    |||||| || |   ||||| |||||||||||||||| ||| |||  |||||||||||||||||| | |||||||||||||| ||||    
T  23907424 ctataacaacacaacttgggcttggatttggagattaaaagttctggaaaaatacaagttttttgtctggcttgcttgtcataacg 23907339  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 50235415 - 50235340
Alignment:
Q  170 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctg 245  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  || |||||||||| || || |||||||    
T  50235415 tcttggtcttggatttggagattgaaaattccagagaaatacaagttacttatttggcttgcatgccataacgctg 50235340  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 34602890 - 34602985
Alignment:
Q  169 ttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctctgct 264  Q
    ||||||||| |||||||||||| | |||||||| ||||||| |||||||||  | |||||||| ||||||||| || | ||||| |||||| ||||    
T  34602890 ttcttggtcctggatttggagacttaaaattcctgaaaaattcaagtttttcatctggcttgcctgtcacaactctatccccaccttatctttgct 34602985  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 34724167 - 34724262
Alignment:
Q  169 ttcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctctgct 264  Q
    ||||||||| |||||||||||| | |||||||| ||||||| |||||||||  | |||||||| ||||||||| || | ||||| |||||| ||||    
T  34724167 ttcttggtcctggatttggagacttaaaattcctgaaaaattcaagtttttcatctggcttgcctgtcacaactctatccccaccttatctttgct 34724262  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 35234781 - 35234872
Alignment:
Q  173 tggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctctgct 264  Q
    |||||||||||||||||  | ||| | || ||||||||||||||| |  ||||||| ||||||||||| ||||| ||||| |||||| ||||    
T  35234781 tggtcttggatttggaggctcaaagtgccggaaaaatacaagtttctcatttggctagcttgtcacaatgctgtccccaccttatctttgct 35234872  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 21403873 - 21403943
Alignment:
Q  170 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 240  Q
    |||||||||||||||||| |  ||||| |||| ||||||||||||||| |  |||||||||| ||||||||    
T  21403873 tcttggtcttggatttggcgtctgaaagttcctgaaaaatacaagtttctaatttggcttgcctgtcacaa 21403943  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 3084352 - 3084282
Alignment:
Q  170 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 240  Q
    |||||||||||||||||| |  | ||||||| ||||||||||||||||||| ||||| | |||||||||||    
T  3084352 tcttggtcttggatttggcgcctaaaaattcaagaaaaatacaagttttttatttggttagcttgtcacaa 3084282  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 37151300 - 37151207
Alignment:
Q  171 cttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaacgctgttcccactttatctctgct 264  Q
    |||||||||||||||||  | ||||  |||||||||||||||||||  |  | |||||||| | ||||||||| | ||| |||||||| |||||    
T  37151300 cttggtcttggatttggcaactgaaggttccagaaaaatacaagttcctaatctggcttgcctatcacaacgcagctcctactttatcgctgct 37151207  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 7818437 - 7818507
Alignment:
Q  170 tcttggtcttggatttggagattgaaaattccagaaaaatacaagttttttctttggcttgcttgtcacaa 240  Q
    |||||||||||||| ||||||||||| | ||| ||||||| |||| |  || |||||||||| ||||||||    
T  7818437 tcttggtcttggatatggagattgaagagtcctgaaaaattcaagctgcttatttggcttgcgtgtcacaa 7818507  T

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