View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_40 (Length: 228)
Name: NF3805_low_40
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 5858974 - 5859176
Alignment:
| Q |
18 |
cttaccttattttcatttaagttctttccaaaacgacctaaaacaaaacaaacaagtgcaaaacttcctcctggttcaatggggtggccgtacataggac |
117 |
Q |
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| T |
5858974 |
cttaccttattttcatttaagttctttccaaaacgacctaaaacaaaacaaacaagtgcaaaacttcctcctggttcaatggggtggccgtacataggac |
5859073 |
T |
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| Q |
118 |
aaacccttcaactctactcccaagacccaaatgttttcttcttctccaaacaaaaaaggttgctatgctacctatgtagttccactccacccctatgctt |
217 |
Q |
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| T |
5859074 |
aaacccttcaactctactcccaagacccaaatgttttcttcttctccaaacaaaaaaggttgctatgctacctatctagttccactccatctccatgctt |
5859173 |
T |
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| Q |
218 |
ctc |
220 |
Q |
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||| |
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| T |
5859174 |
ctc |
5859176 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 10422675 - 10422745
Alignment:
| Q |
87 |
cctggttcaatggggtggccgtacataggacaaacccttcaactctactcccaagacccaaatgttttctt |
157 |
Q |
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| T |
10422675 |
cctggttcaatgggttggccttacataggagaaacttttcaactttattctcaagaccctaatgtcttctt |
10422745 |
T |
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