View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_5 (Length: 673)
Name: NF3805_low_5
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 42 - 659
Target Start/End: Original strand, 33620273 - 33620890
Alignment:
| Q |
42 |
ttacaaagcttgacaattttctccaaatttaactttaatgtgacaatatttttaatattaaagaatggttacatttgcaataagagttggagttcaagac |
141 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
33620273 |
ttacaaagctcgacaattttctccaaatttaactttaatgtgacaatatttttaatattaaagaatggttacatttgcaataaaagttggagtttaagac |
33620372 |
T |
|
| Q |
142 |
aatactaaataatgccacctcaacataaatttcatagaaatattgggatgaaaactaccaaatcacaaagagaaaaatacaagggtcaaaattgctcaaa |
241 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33620373 |
aatactaaataatgccaactcaacataaatttcatagaaatattgggatgaaaactaccaaatcacaaagagaaaaatacaagggtcaaaattgctcaaa |
33620472 |
T |
|
| Q |
242 |
aatatgggagcctgaaatcactaaatctatcgtatttttgggttaagtgcaattaggcttgttttaggtagaagaggggccaaggaccatgtttttgtgc |
341 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33620473 |
aatatgggagtctgaaatcactaaatctatcgtatttttggatcaagtgcaattaggcttgttttgggtagaagaggggccaaggaccatgtttttgtgc |
33620572 |
T |
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| Q |
342 |
aaattctaatcattttatttgtacgttcaatcagattcaaacaaaaatcaagagaaaaattgtgttaagcttgattttgcttttgaagaaaccaaactaa |
441 |
Q |
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||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33620573 |
aaattctaatcattttatttgtatgttcaatcgaattcgaacaaaaatcaagagaaaaatcgtgttaagcttgattttgcttttgaagaaaccaaactaa |
33620672 |
T |
|
| Q |
442 |
ccaactaaaactaacatcgaaaagaatcgaatatccacacttttaagtggagcatacttcaaaatcgaaaccaacacaagtggataatatttcgatatta |
541 |
Q |
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| T |
33620673 |
ccaactaaaactaacatcagaaagaatcaaatatccacacttttaagtggagcatacttcaaaatcgaaaccaacacaagtggataatatttcgatatta |
33620772 |
T |
|
| Q |
542 |
ttgaacaggtgacaataaatcatggggctgtattggtattattttagtctttgaagggcatgaataaaatgtcaaagttaatttccttttcatgaacttt |
641 |
Q |
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| T |
33620773 |
ttgaacaggtgacaataaatcatggggctgtattggtattattttagtctttgaagggcatgaataaaatgtcaaagttaatttccttttcatgaacttt |
33620872 |
T |
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| Q |
642 |
ctccatcaagtacctatg |
659 |
Q |
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| T |
33620873 |
ctccatcaagtacctatg |
33620890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 90 - 363
Target Start/End: Original strand, 33622419 - 33622690
Alignment:
| Q |
90 |
tttttaatattaaagaatggttacatttgcaataagagttggagttcaagacaatactaaataatgccacctcaacataaatttcatagaaatattggga |
189 |
Q |
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|||||||| |||||||| |||| ||||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
33622419 |
tttttaattttaaagaacagttatatttgcaataagagttggagtccaagacagtattaaataatgtcgcctcaacataaatttcatagaaaaattggga |
33622518 |
T |
|
| Q |
190 |
tgaaaactaccaaatcacaaagagaaaaatacaagggtcaaaattgctcaaaaatatgggagcctgaaatcactaaatctatcgtatttttgggttaagt |
289 |
Q |
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| T |
33622519 |
tgaaaactacgaaatcacagagag-aaaatacaagggtcaaaattgctcaaaaatacaggagcctaaaatcactaaatct-ttgtatttttgtgtcaagt |
33622616 |
T |
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| Q |
290 |
gcaattaggcttgttttaggtagaagaggggccaaggaccatgtttttgtgcaaattctaatcattttatttgt |
363 |
Q |
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| T |
33622617 |
gcaattaggcttcttttaggtagaagaggggccaaggaccatgtttttttgcaaattcgaatcattttatttgt |
33622690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 517 - 658
Target Start/End: Original strand, 33624153 - 33624298
Alignment:
| Q |
517 |
acaagtggataatatttcgatattattgaacaggtgacaataaatcatgggg-ctgtattg---gtattattttagtctttgaagggcatgaataaaatg |
612 |
Q |
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||||| || |||| |||| ||||| ||||||||||||||||| || |||||| ||||| || |||| ||| |||||||| ||||||||||||||||| |
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| T |
33624153 |
acaagggggtaatctttccatatttttgaacaggtgacaatatataatggggactgtagtgtcggtatgattatagtcttttcagggcatgaataaaatg |
33624252 |
T |
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| Q |
613 |
tcaaagttaatttccttttcatgaactttctccatcaagtacctat |
658 |
Q |
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| T |
33624253 |
tcaaagttaatttccttttcatgaactctctccatcaagtatctat |
33624298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 542 - 638
Target Start/End: Original strand, 33626730 - 33626826
Alignment:
| Q |
542 |
ttgaacaggtgacaataaatcatggggctgtattggtattattttagtctttgaagggcatgaataaaatgtcaaagttaatttccttttcatgaac |
638 |
Q |
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||||||| ||||| |||||| ||||||| || | ||||| || ||| |||| | | |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
33626730 |
ttgaacaagtgaccataaataatggggcagtgtcggtatggttatagccttttaggagcatgaataaaacgtcaaagttaatttcgttttcatgaac |
33626826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 33620231 - 33620266
Alignment:
| Q |
13 |
ttttcaacattttaacgctcttatttaggttacaaa |
48 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33620231 |
ttttcaacattttaacgctcttatttaggttacaaa |
33620266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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