View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_6 (Length: 561)
Name: NF3805_low_6
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 13511817 - 13511410
Alignment:
| Q |
11 |
caaagggaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagt |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13511817 |
caaagagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagt |
13511718 |
T |
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| Q |
111 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13511717 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatca |
13511618 |
T |
|
| Q |
211 |
ttgggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtcc |
310 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13511617 |
tttggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtcc |
13511518 |
T |
|
| Q |
311 |
tttagattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgt |
409 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13511517 |
tttagattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgt |
13511418 |
T |
|
| Q |
410 |
gattattg |
417 |
Q |
| |
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|||||||| |
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| T |
13511417 |
gattattg |
13511410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 13601348 - 13600941
Alignment:
| Q |
11 |
caaagggaacatatgtctatttataggctaagtactactacattcatgtattacatcataatcatcatattaaatagcaattacatcaaatcattcaagt |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
13601348 |
caaagagaacatatgtctatttataggctaagtactactacattcatgtattacatcataagcatcatattaaatagcaattacatcaaatcattcaagt |
13601249 |
T |
|
| Q |
111 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcatgatca |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13601248 |
gttcaaacaaaaatccaacaagcatgagctttgtagttgttacggcaatagccccccattacagctagtcgtaacaacttatgttttgaaagcgtgatca |
13601149 |
T |
|
| Q |
211 |
ttgggcttctcccatcattaggtgatggattcccacttcttactcgtttaaaattgtcttaattgaattaggtattggcttggtcaacaaacatttgtcc |
310 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13601148 |
tttggcttctcccatcattaggtgatggtttcccacttcttactcgtttgaaattgtcttaattgaattaggtattgacttggtcaacaaacatttgtcc |
13601049 |
T |
|
| Q |
311 |
tttagattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgt |
409 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13601048 |
tttagattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactgt |
13600949 |
T |
|
| Q |
410 |
gattattg |
417 |
Q |
| |
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|||||||| |
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| T |
13600948 |
gattattg |
13600941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 13511343 - 13511280
Alignment:
| Q |
484 |
agtcaacgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaatt |
547 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13511343 |
agtcaacgtctcagtttattccccaatttcctttacaattctcttatggtgtttccttcaaatt |
13511280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 484 - 547
Target Start/End: Complemental strand, 13600874 - 13600811
Alignment:
| Q |
484 |
agtcaacgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaatt |
547 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13600874 |
agtcaacgtctcagtttattccccaatttcctttacaattctcttatggtgtttccttcaaatt |
13600811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 16798926 - 16798835
Alignment:
| Q |
325 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
415 |
Q |
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||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
16798926 |
attatcgcggcccaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactctgattat |
16798835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 16840277 - 16840186
Alignment:
| Q |
325 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
415 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
16840277 |
attatcgcggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgattctgattat |
16840186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 489 - 546
Target Start/End: Original strand, 17585157 - 17585214
Alignment:
| Q |
489 |
acgtctcagtttattctccaatttcctttacaattctcttatggtgtttccttcaaat |
546 |
Q |
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||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |
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| T |
17585157 |
acgtctcagtttattctccaatttcctttctagttctcttattgtgtttccttcaaat |
17585214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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