View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3805_low_8 (Length: 468)
Name: NF3805_low_8
Description: NF3805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3805_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 22362611 - 22362141
Alignment:
| Q |
1 |
agatggtccaattgtgttcattgacgatgattctcattctcctagtctatggaccaaattccttgaactgaagaagaataacaaagtgcaacaccttaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22362611 |
agatggtccaattgtgttcattgatgatgattctcattctcctagtctatggaccaaattccttgaactgaagaagaatgacaaagtgcaacaccttaag |
22362512 |
T |
|
| Q |
101 |
acattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggagaaagctcatgaaaaatgtattaggaaaagagaagaagaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22362511 |
acattggtacaaagacaagaagaagaggaagaggagaagcaaacaagttggtcatggaggaagctcatgaaaaatgtattaggaaaagagaagaagaaga |
22362412 |
T |
|
| Q |
201 |
tagagaataaagacagagctgattcccctgactcttacaatctttatgatagaaaacctgatttccgaaatgcatatggttggagcagtgcattggatgg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362411 |
tagagaataaagacagagctgattcccctgactcttacaatctctatgatagaaaacctgatttccgaaatgcatatggttggagcagtgcattggatgg |
22362312 |
T |
|
| Q |
301 |
tggcgattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagacctcacatattctaaccatga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
22362311 |
tggcgattattctccgctcaaaatacctgatatcggtgtttttcacgtcaatctcaccgcggtatgcaaacaaacaagaccttacatattttaaccatga |
22362212 |
T |
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| Q |
401 |
tct---tgctgggttcttattcatcttttctttttcatgcgttgtgtatgttagggatcaatgatggcacc |
468 |
Q |
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| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
22362211 |
tattgctgctgggttcttattcatcttttctatttcatgcattgtgtatgttagggatcaatgatggcacc |
22362141 |
T |
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