View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_10 (Length: 437)
Name: NF3806_high_10
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Original strand, 24566539 - 24566945
Alignment:
| Q |
17 |
atgaatgattgaaagtgtaactttttt-attacagtaacattgtgttaaaatcaaactcaaatgaaaatatgaaattttggaagttgaaattaaaggagg |
115 |
Q |
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| T |
24566539 |
atgaatgattgaaagtgtaactttttttattacagtaacattgtgttaaaatcaaactca--tgaaaatgggaaattttggaagttgaaactaaaggagg |
24566636 |
T |
|
| Q |
116 |
cctactttgtttccctaccgattttgttctctacagagacctagcatgtactgtgtatcaataatgccgtgggcacagtttgtcttgttcatattagttg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566637 |
cctactttgtttccctaccgattttgttctctacagagacctagcatgtactgtgtatcaataatgccgtgggcacagtttgtcttgttcatattagttg |
24566736 |
T |
|
| Q |
216 |
tcatatttggtcctagagctagaggaacttaaatagtagtggtaccaaatcaaccgaaccattgagacttaggtttgtaatctggaatggaannnnnnnn |
315 |
Q |
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| T |
24566737 |
tcatatttggtcctagagctagaggaacttaaatagtagtggtaccagatcaaccgaaccattgggacttaggtttgtaatctggaatggaatttttttt |
24566836 |
T |
|
| Q |
316 |
nccacctccaacatgggttcagacaaattattaattttatctgaagtacagataatttatgttgtgtgaaagcgaaggagggtaaaaagtagtgtccttt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566837 |
tccacctccaacatgggttcagacaaattattaattttatctgaagtacagataatttatgttgtgtgaaagcgaaggagggtaaaaagtagtgtccttt |
24566936 |
T |
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| Q |
416 |
gtcatagtt |
424 |
Q |
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| T |
24566937 |
gtcatagtt |
24566945 |
T |
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