View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_11 (Length: 425)
Name: NF3806_high_11
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_11 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 8350458 - 8350786
Alignment:
| Q |
1 |
tagtatttttccaatgttagattatagattctaggatgacaaaggaagtgaaacatttacggcctgtggtttatgacacaacatgcttgatatttctctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8350458 |
tagtatttttccaatgttagattatagattctaggatgacaaaggaagtgaaacatttacggcctgtggtttatgacacaacatgattgatatttctctt |
8350557 |
T |
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| Q |
101 |
caaatgtgtcggtatggtcagacgtagttcaactttttctaacacttatattgaacatgctatctctttggaaataaaaagaaagttcatagaattctgc |
200 |
Q |
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| T |
8350558 |
caaatgtgtcggtatggtcagacgtagttcaactttttctaacacttatattgaacatgctatctctttggaaataaaaagaaagttcatagaattctgc |
8350657 |
T |
|
| Q |
201 |
ataaacttattttaggtattgattagtatcaaccttttaacatcgtgcatggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatat |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8350658 |
ataaacttattttaggtattgattagcatcaaccttttaacatcgtgcatggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatat |
8350757 |
T |
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| Q |
301 |
cataccctccaacatgtacattccatgaa |
329 |
Q |
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| T |
8350758 |
catactctccaacatgtacattccatgaa |
8350786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 8480654 - 8480559
Alignment:
| Q |
2 |
agtatttttccaatgttagattatagattctaggatgacaaaggaagt-----gaaacatttacggcctgtggtttatgacacaacatgcttgata |
92 |
Q |
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| T |
8480654 |
agtatttttccaatgttggattgttgattctaggatgacaaaggaagtcaagtgaaacatttacggcatgtggtttgtgacacaacatgcttgata |
8480559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 402
Target Start/End: Original strand, 8412058 - 8412143
Alignment:
| Q |
317 |
tacattccatgaaaccttgctccttctttcatgccttttgtcaaacagtttttatacatgtttgaaggcatgtccttataagatat |
402 |
Q |
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| T |
8412058 |
tacattccatgaaaccttgatccttctttcacgctttttgtcaaacagtttccatagatggttgaaggcatttccttataagatat |
8412143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 8479948 - 8479879
Alignment:
| Q |
236 |
tttaacatcgtgcatggtaaaaccatggtgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
305 |
Q |
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| T |
8479948 |
tttaacattatgcatggcaaaataatggtgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
8479879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 8479814 - 8479759
Alignment:
| Q |
317 |
tacattccatgaaaccttgctccttctttcatgccttttgtcaaacagtttttata |
372 |
Q |
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| T |
8479814 |
tacattccatgaaaccttgctccttctttcgtgcagtttgtcaaacagtttctata |
8479759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 8427433 - 8427353
Alignment:
| Q |
125 |
tagttcaactttttctaacacttatattgaacatgctatctctttggaa---ataaaaagaaagttcatagaattctgcat |
202 |
Q |
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| T |
8427433 |
tagttcaacattttctaacacttactctgaacatgctatctctttagaaaataaaaaaaaaaagttcatagaattctgcat |
8427353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 8436590 - 8436639
Alignment:
| Q |
94 |
ttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaac |
143 |
Q |
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| T |
8436590 |
ttctcttcggatgtgtcggtatggtcagacatagttcaactttttctaac |
8436639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 8451605 - 8451646
Alignment:
| Q |
264 |
tgagcaaatgcatatgaatcaaacaagttttgcatatcatac |
305 |
Q |
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| T |
8451605 |
tgagcaaatgcatatgaatcaaacaagtgttgcatatcatac |
8451646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 8350783 - 8350823
Alignment:
| Q |
379 |
tgaaggcatgtccttataagatatccccctgtctctgctcc |
419 |
Q |
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| T |
8350783 |
tgaaggcatgtccttataagatatccccctgtctcttctcc |
8350823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 8435235 - 8435340
Alignment:
| Q |
54 |
catttacggcctgtggtttatgacacaacatgcttgatatttctcttcaaatgtgtcggtatggtcagacgtagttcaactttttctaacacttatattg |
153 |
Q |
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||||| |||||| |||||| ||||| ||| |||||| | |||||||||||||||||||| |||| | |||||||||| |||||| | ||||| ||| |
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| T |
8435235 |
cattttcggcctttggtttgtgacaaaaccgtcttgatctgtctcttcaaatgtgtcggtacggtctcatatagttcaactatttctatctcttattttg |
8435334 |
T |
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| Q |
154 |
aacatg |
159 |
Q |
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||||| |
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| T |
8435335 |
gacatg |
8435340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 9240 - 9322
Alignment:
| Q |
125 |
tagttcaactttttctaacacttatattgaacatgctatctct---ttggaaat--aaaaagaaagttcatagaattctgcat |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || ||||| ||||| ||||||||||||||||||||| |
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| T |
9240 |
tagttcaactttttctaacacttactctgaacatgctatctctttattagaaataaaaaaaaaaagttcatagaattctgcat |
9322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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