View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3806_high_18 (Length: 335)
Name: NF3806_high_18
Description: NF3806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3806_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 41088999 - 41089306
Alignment:
| Q |
19 |
atcttgctggtcgaatccttcattatacacctgtgcccatttgggataatatcactgccaacgttgctagcttcatcaccaccttcacattcaaagttgt |
118 |
Q |
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| T |
41088999 |
atcttgctggtcgaatccttcattatacaccggtgcccatttgggataatatcactgccaacgttgctagtttcatcaccaccttcacattcaaagttgt |
41089098 |
T |
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| Q |
119 |
agacttcaaagatttttcaccaggtagtggacttgtcttccatcttttaccactagatcaaaactatcttcctaacaactcagatggtggataccttgga |
218 |
Q |
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| T |
41089099 |
agacttcaaagatttttcaccaggtagtggacttttcttccatcttttaccactagatcaaaactatcttcctaacaactcagatggtggataccttgga |
41089198 |
T |
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| Q |
219 |
gttattgactccaaaaatgcgttgaatcaatttgttggtgtagagtttgatggtgtgagtccatgggatcccaaatacactcatgttggaattgatgtca |
318 |
Q |
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| T |
41089199 |
gttattgactccaaaaatgcattcaatcaatttattggtgtagagtttgatggtgttagttcatgggatcccaaatacactcatgttggaattgatgtca |
41089298 |
T |
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| Q |
319 |
actcattg |
326 |
Q |
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| T |
41089299 |
actcattg |
41089306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 41074079 - 41074147
Alignment:
| Q |
202 |
atggtggataccttggagttattgactccaaaaatgcgttgaatcaatttgttggtgtagagtttgatg |
270 |
Q |
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| T |
41074079 |
atggtgcaaaccttggagttgttgacgataacaatgcttacaatcaatttgttggtgtagagtttgatg |
41074147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 21482867 - 21482903
Alignment:
| Q |
232 |
aaaatgcgttgaatcaatttgttggtgtagagtttga |
268 |
Q |
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| T |
21482867 |
aaaatgctttcaatcaatttgttggtgtagagtttga |
21482903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 21493019 - 21493055
Alignment:
| Q |
232 |
aaaatgcgttgaatcaatttgttggtgtagagtttga |
268 |
Q |
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| T |
21493019 |
aaaatgctttcaatcaatttgttggtgtagagtttga |
21493055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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